Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05827 ATGGAGAGACCACAGACTCAAACTCAAAAACATTCAGGTATTTTTGCCTTCAAGGATGATCAAAGACTCCGGAAAGGAGAATCCATTTCACCGCAGCTTTTACAAGCAATTAAAGATTCACGGATTTCAATAGTTGTATTCTCTAAAGATTATGCTTCCTCACCATGGTGTTTGAATGAAATGGCTACTATTGCTGAATGCCATAAACAACTTAAACAAACTGTTTTCCCTGTTTTCCATGGTGTTGATCCATCTCATGTAAGAAATCAGAATGGGGTGTACCAGAATGCTTTCTTTTTACACACAAAGAAATTCAAACATGATCCAAGCAAGGTTGGTCGATGGAAGATAGCTATGACTGACTGGGTAATTTGGTTGGATGGGATGCCAGAATTTGAAGAGATTGAAAAAATTGTTCAGGCTGTAATAAAAACATTGGGTCATAAATTCTCAAGCTTAAATAATGATCTAGTTGGGATACAACCTCGTGTAGAAAAATTAGAAAGGCTTCTAAAGTTGAGCATAAAGGATGATGAATTTCGAGTTCTAGGAATTTGGGGAATGGATGGAATAGGAAAGACAACTCATGCTACTGTTTTGTATGACAGATTCTCTGATCAGTTTGATGCCTGCTGTTTTATTGAGAATGTAAGCAAAATTTACAAAGATGGTGGTGCTATTGCTGTACAGAAACAAATTCTTCGTCAAGCTCTAGATGAAAAAAATCTTGACACGTACAGTGCACCTGAAATATCTGGGATTATAATGAATAGGCTACATAGCAGTATTAAGGTGCTTCTAGTTCTTGACAATGTTGATGAATTAGAGCAATTGCAGGAATTGGCTATAAATCCTAAGTTCCTTTACAAAGGAAGTAAAATAATCATAACCACAAGGGATGAGCATATTCTAACAGTATATGGAGCAAATAAAGCTCACGAGGTACTAAAATATACTCAATGTCTTCCATTAGCAATTAGAGTAGTGGGTTCTTTCTTGTGTGCCCGGGATGCTACCCAGTGGAGGGATGTCTTGGATAGATTTCAGAACAATCCAGACAAAAAAATTATGGATGTGCTTCAGATAAGTGTCGATGGACTAGAAGAAGAGGAAAAAGAAATATTTCTGCACATTGCTTGTTTTTTTAAAGGGGAAAGGGTGGATTATGTAAAGCGAATTCTAGATGCTTGTGGATTACATTCTCATATTGGAATACAAAGAATCATTGAGAAATCACTCATAACCATTAGAAACCAGGAAATTCATATGCATGAAATGCTACTGGAATTAGGAAAGAAAATTGTTCGACATCAATTTCCCAAAGAGCCAGGATCGTGGAGTAGATTATGGCTCTACAAGGATTTCTATCACGTCTTGATGACAGATATGGGAGCAGACAATGTTAAATTCATAGTTCTGGATAAAAAAGAGAGATATAACTTCAAATGCAAGGTCGAAGGATTGTCGAATATGAGAAACCTTAGATTGCTCATATTATATCATAACAATTTTACAGGAAGTTTCAATTTTCTTTCTAATCACCTGCAATATCTTTCATGGCATGGATACCCTTTTGCTTCTTTGCCATCAAGTTTTGAGTCGTATAATCTTGTGGAATTGAATATGCCTGACAAGATCCCAAACCTTGAGCGGCTAGATTTTACAGGATGCACAAACTTGTTGCAGGTCCATCATTCAATTGGACATCTCACAAAACTCGCTTTCTTGAGTTTGCGAAATTGTAGCAATCTGGTTAGCCTTGATTTTGGCAGTGTATCAAATTTAAGTTCTTTGAGAGTTCTACTCCTCTCTGGTTGCATAAAACTTGATAACATGCCAAAATTTACAGGGGCATTGAATCTTGAGCACCTTGATATGGGTCAATGTACAAATTTAACAACGATTCATGAATCTATTGGGGCTCTTGCAAAACTTAGATTCTTGAGTTTGATAGACTGCTTGAAACTTACAAATTTGCCTCTTAGACAAACCTTCAATTTTTTTTCCCATCTGGAATCTTTGATTTTTTTGGACTTAAGCTTTTGCAATCTTCTTGGAATACCTGATGCTATTGGAGAGTTAAGCTGTTTAGAAAGACTAAATCTACAGGGAAATAACTGTGTTTCACTACCTTCTACCATCAAAAGGCTTTATAGCCTAGCATATTTGAACTTGGCTCATTGCCAGGAGCTTCAGTCTTTGCCAGAGCTACCATTAGCAAGTTCTTCAACAGTGGGAAGATATTATAAAATGACACCTGGATCACGTGATCATAGGTCGGGATTATATATTTTTGACTGTCCCAAGGTGGTGATTGACAAAGACATGATGTCTTACTGCCTTCAATGGCTACAAAGACTAATTAAGGAACCTCGTCACTTCCGTTGTGGCTTTGACATTGTTGTTCCTTTGGATTCGAAAAATATTAGTTCTCCACAGAGCTATCTTATTCCACAATGGTTTTATTATCGATTTGGTGGGGGTTCAATAATAAGCATAAACCAGTCTAGTATGATGGACAATTGGACCGGCTTTATCTTTTGGGTAGCATTTGAGGTAAACAATCCTCTTGCAGTTTCAGGTTCTCCACATCATTTGCTCACCTCTCCATTGCCACATCCATTTTATCTCTCTTTTGAAAATGAGTACACAGAAGAACGCTTTGATATGCCACTTAGTTTGAAACTGAACAAGATTCATGGCTCAAAATATCTTTGGGTAATCTATATCTCTCGGATGCACTGTCATTTTGTGAAAACAAGGATGCGTATTACATTTAAAGCCCACCCATGTTTGAAGATAGAAAAATGGGGGTTAAGCAGGGTACTCGAGCAAGATATAGAGGTGACAGGAGTATGTACGATCGAACCAGCTTCTGATGATCAAGATGACCAATCCTTCAATGATTACATAACAAAAATATTTTGGGATGATGCGGACTTGCATATGTTTGGTTATGTAAAAAAGAGCCAGTTTCCCTACAATTGGTTGAATATTACTGAGGAAGAGGAAATCGAGAATTTTGAAGCCAAGTCAAAAGAAAATTATCTTTTTAATCTGGGTTTTTAG 3069 0.3695 MERPQTQTQKHSGIFAFKDDQRLRKGESISPQLLQAIKDSRISIVVFSKDYASSPWCLNEMATIAECHKQLKQTVFPVFHGVDPSHVRNQNGVYQNAFFLHTKKFKHDPSKVGRWKIAMTDWVIWLDGMPEFEEIEKIVQAVIKTLGHKFSSLNNDLVGIQPRVEKLERLLKLSIKDDEFRVLGIWGMDGIGKTTHATVLYDRFSDQFDACCFIENVSKIYKDGGAIAVQKQILRQALDEKNLDTYSAPEISGIIMNRLHSSIKVLLVLDNVDELEQLQELAINPKFLYKGSKIIITTRDEHILTVYGANKAHEVLKYTQCLPLAIRVVGSFLCARDATQWRDVLDRFQNNPDKKIMDVLQISVDGLEEEEKEIFLHIACFFKGERVDYVKRILDACGLHSHIGIQRIIEKSLITIRNQEIHMHEMLLELGKKIVRHQFPKEPGSWSRLWLYKDFYHVLMTDMGADNVKFIVLDKKERYNFKCKVEGLSNMRNLRLLILYHNNFTGSFNFLSNHLQYLSWHGYPFASLPSSFESYNLVELNMPDKIPNLERLDFTGCTNLLQVHHSIGHLTKLAFLSLRNCSNLVSLDFGSVSNLSSLRVLLLSGCIKLDNMPKFTGALNLEHLDMGQCTNLTTIHESIGALAKLRFLSLIDCLKLTNLPLRQTFNFFSHLESLIFLDLSFCNLLGIPDAIGELSCLERLNLQGNNCVSLPSTIKRLYSLAYLNLAHCQELQSLPELPLASSSTVGRYYKMTPGSRDHRSGLYIFDCPKVVIDKDMMSYCLQWLQRLIKEPRHFRCGFDIVVPLDSKNISSPQSYLIPQWFYYRFGGGSIISINQSSMMDNWTGFIFWVAFEVNNPLAVSGSPHHLLTSPLPHPFYLSFENEYTEERFDMPLSLKLNKIHGSKYLWVIYISRMHCHFVKTRMRITFKAHPCLKIEKWGLSRVLEQDIEVTGVCTIEPASDDQDDQSFNDYITKIFWDDADLHMFGYVKKSQFPYNWLNITEEEEIENFEAKSKENYLFNLGF. 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05827 1022 Gene3D - 308 372 IPR042197 -
Seca4g05827 1022 Gene3D Ribonuclease Inhibitor 475 617 IPR032675 -
Seca4g05827 1022 Gene3D Ribonuclease Inhibitor 618 745 IPR032675 -
Seca4g05827 1022 SMART till_3 3 125 IPR000157 GO:0007165
Seca4g05827 1022 PRINTS Disease resistance protein signature 182 197 - -
Seca4g05827 1022 PRINTS Disease resistance protein signature 669 685 - -
Seca4g05827 1022 PRINTS Disease resistance protein signature 319 333 - -
Seca4g05827 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 613 IPR044974 GO:0006952
Seca4g05827 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 378 IPR027417 -
Seca4g05827 1022 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 121 IPR035897 -
Seca4g05827 1022 ProSiteProfiles TIR domain profile. 1 146 IPR000157 GO:0007165
Seca4g05827 1022 Gene3D - 6 121 IPR035897 -
Seca4g05827 1022 Pfam NB-ARC domain 167 313 IPR002182 GO:0043531
Seca4g05827 1022 Gene3D - 122 307 IPR027417 -
Seca4g05827 1022 Pfam TIR domain 10 158 IPR000157 GO:0007165
Seca4g05827 1022 SUPERFAMILY L domain-like 423 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05827 Seca-Chr4 111581493 111586368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05827 24 723 WRKY Transcription Factor Family AT4G12020 28.535 3.23e-63 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05827 - - var:108332841 1114.37