Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05826 ATGAACTCAAAATCAAAACATTCAGATACGTTACTCTCTCGGAAATCCTTCCTTATGCGACCGATTTGGGCCCTGCTGGGTCGTCGGCGACGATCTCATCGGCCATCTTCTGATCTGAATCTGTTGGGCCAGAGTGGGACAACTTCCAACCCATTGGGCCAAGAAGCTACAACCTCCAATTCTTCCTTGGATTCCAATAGTATACAAAGCAACCCCTCCTCTCTGCTGAACTATAGATACGATGTGTTTATCAGTTTTAGAGGTACTGACACTCGCAACACTTTCGTTGATCATCTCTATGCTCATCTCATTAGGAAAGGTATTTTAGCCTTTAAAGATGACCAGAGTCTCAAGAAAGGAAAATGTATTTCACCACAGCTTCTAGAAGCAATTAAACACTCACGGGTTTCTATTATTGTCTTCTCAAAAAATTATGCTGAGTCATCATGGTGTCTGGATGAAATGGCTGCAATTGTTGAATGCCGTAAAGAATTCAAGCAAACTGTTTTCCCTGTTTTCTATGATGTGGATCCATCTACTGTGCGAAAACAGAATGGGGTGTATGAAGGTGCCTTTGCTTTACATTATGAGAAATTCAAACATGATCCGGGCAAGATTGATAGGTGGAAGAGAGCTATGACAGATTTGGCTGGATCAGCTGGTTGGGATGTCAAGAATAAGACAGAGTTTCGAGAGATTGAAAATATTGTTCAGGCTGTAATAAAAACATTAGGTCATAAATTTTCAGGGTTTGCTGATGACCTTATTGGTATACAACCTCGGGTAGAAGCTTTAGAAAACCTTTTCAAATTAACCTCATTGAATGATGACTTTCCGGTATTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCTTGCTACTGTATTGTATGATAGGATCTGTTATCAGTTTGACGTTTGCTGTTTTATTGAGAATGTAAGCAAAGTTTATAGAGAAGGTGGTGCTATTGCTGTGCAAAAGCAAATCCTTAGCCAAACTTTAGATGAAATAAATCTAGAGACATACAGTCCTTCTCAAATATTTGGAATTGTAAGAAATAGGCTACTGAACATAAAGGCTCTTATAGTTCTGGACAATGTTGATCAATTAGAGCAACTTCAGGAATTGGCTATAAATCCTAAATTGCTTTACGTAGGAAGTAGAATGATCATTACAACCAGGGATGAGCATATCCTAAAAGCGTTTGGAGTGCAGGTGGTGTACAAGGTTCCACTATTGAATAGTGATGATGCTCGTAAACTTCTTTATAGAAAAGCCTTCAAAAGTGATGATCCTAGTAGTGAATGTGCAGAGTTGACTCCTGAGATACTAAAATATGTGCAAGGTCTTCCATTAGCAGTTAGTGTAGTAGGTTCTTTCTTGTGTGCTCGAAATGCAACCCAGTGGAGAGATGCCTTGTATAGAATGAGGAACAATCCAGACAACAAAATTATGGATGTGCTTCAGATAAGTTTTGAAGGATTACATTTAGAGGACAAAGAAATATTTCTACATATTGCTTGTTTCTTTAAAGGAGAGAAGGAAGATTATGTAAAGCGAATTCTCGATGCTTGTAGGTTACACCCGCATATTGGAATTCAAAATATGATCGAGAGATCACTCATAACTATTAGAAACCAGGAAATTCATATGCATGATATGTTGCAAGAGTTGGGGAAGAAAATTGTTCGACAACAATTTCCTGAAGAACCAGAATCATGGAGTAGATTGTGGCTTTATCAGGATTTCCATCATGTCATGATGACAAAAACGGGATCGAACAAGGTTAAAGCTATAATTCTGGATCAAAATGAGGATATTTCTGAATGCCCTCAGTTGAGGGCTGAAGGGTTGTCAACAATGAGGGGCCTTATAATTCTGATATTATATCACAAGAATTTCTCAGGAAGCCTCAATTTTCTTTCTAACAACTTGCAGTATCTTCTATGGCATGGCTACCCTTTTGCTTCTTTGCCATTAGATTTTGAGCCGTATCGGCTTGTTGAATTGAATATGCCTTACAGCAACATCCAACGACTATGGGAAGGTCGCAAGGTTCTCCCTCATTTGAAAAGAGTGGATCTGAGCAACTCCAAATATCTCACAGAGACACCAAATTTTGCAGGGAGCCGACGACTTGAGCAGCTTGATCTGACAGGATGCATAAGCCTCTCCCATGTTCATCCATCAATTGAACTTCTTGAAAAACTTGCTTTCCTGAGTTTGGAAGGCTGTAGTAGTCTGGTCAGCCTTGATCTTGACACTACATCCAATTTATATTCTCTGAAAGTTCTACACCTCTCTGGCTGCACTGAACTAAGAAGCACACCAGATTTTACTGGGGTCTCAAATCTTGAGTACCTTGATATTGATCAATGTGTGAGTTTATCAATGGTTCAATCTATTGGAGATCTTTCAAAGCTTAAATTCTTGAGTTTGAGAGACTGCAAAAATCTTGTCAGTATACCTGGAAATGCTAATACTATGACATCACTTATTACTCTAGATTTATGTGGCTGCTCAAAACTTACGAATCTTCCCTTGCTGGGACAGACACCAGTGTCTGCAGAAAATATTTACCTCTCTGATGATGAACTCGCGTCTTCTATCTATCTGGGTTTTTTGGTTTTTTTGGACGTAGGCTTTTGCAATCTAAGTGAAGTCCCTGATGCTATTGAAGAGTTATGGCATTTAGAAAGGCTAAATCTAGAAGGAAACGACTTTGTTTCACTACCATCTTCTCTGGGCTTGCTTCCCAGACTAGCTTACTTAAACTTAGCTCATTGCAGCAGGCTTCATTTTTTGCCTGAGCTCAAGTTGTGCGCTACTGCTTCATTAGGGGGAAGTTATTTTAAAACAGTATCTGGATCTCATAATCATAGGTCAGGATTATATATTTTCAACTGTCCCTTCTTGCAGATCCCAGATGGAGGTCAAAACTTGGCATTTTCATGGCTAGAGAGGCTAGTCAAGAATCCTTGTCACTTCCGGTGTGGCTTTGACATTGTTGTTCCTGGGAACATAATTCCACAATGGTTTGATCATCAATTTATGGGATATTCTAGAGTGAGGATAGCGGAATGTGTGTCCAAGAGTGACAATTGGCTTGGATTTGCCTTTTGTGTGGCATTTAAGAAAATGTATCACCCTACAATGTTTGGTTCTTCAGAAGATTCATTTTCCTCATTTCTGCCATATTCTTTGTATCTTTCTTTTGAAAATGAACAAACGGAAGAAACTTTTGATATGCCACTTTGGTTAAAGTTTGATGGCTTGAATTCAGAACATCTGTGGATAATCTACATATCTCGGCCACACTGCCATTTTGTAACAACAGGAGCACATATCACATTTAAAGCTCGCCCAGGTTTGGAGCTGAAAACATGGGGGTTACGCATGGTATTCGAGAGTGATAACTTCAATCCACTCAGTGAGTTGGTGACAAACATTGAGGTTAATGAGGTAGAGTATCCTCCCTTGGATTACGAACATGAAAGCAGCAGCAACTCCAGGCATAAAATCCAGCTTCCTTATAATTGGTTGCTTACTGAGGATGTACATGAAGCTGACAGCAGCTCTGGGTCAAAATTCCAGCTTCCCTATAATTGGCATGTTACTGAGGAAGAGGAAAATGAGAGTTGGCAAGTGAACATGAAAAATACATATTAA 3675 0.3946 MNSKSKHSDTLLSRKSFLMRPIWALLGRRRRSHRPSSDLNLLGQSGTTSNPLGQEATTSNSSLDSNSIQSNPSSLLNYRYDVFISFRGTDTRNTFVDHLYAHLIRKGILAFKDDQSLKKGKCISPQLLEAIKHSRVSIIVFSKNYAESSWCLDEMAAIVECRKEFKQTVFPVFYDVDPSTVRKQNGVYEGAFALHYEKFKHDPGKIDRWKRAMTDLAGSAGWDVKNKTEFREIENIVQAVIKTLGHKFSGFADDLIGIQPRVEALENLFKLTSLNDDFPVLGIWGMGGIGKTTLATVLYDRICYQFDVCCFIENVSKVYREGGAIAVQKQILSQTLDEINLETYSPSQIFGIVRNRLLNIKALIVLDNVDQLEQLQELAINPKLLYVGSRMIITTRDEHILKAFGVQVVYKVPLLNSDDARKLLYRKAFKSDDPSSECAELTPEILKYVQGLPLAVSVVGSFLCARNATQWRDALYRMRNNPDNKIMDVLQISFEGLHLEDKEIFLHIACFFKGEKEDYVKRILDACRLHPHIGIQNMIERSLITIRNQEIHMHDMLQELGKKIVRQQFPEEPESWSRLWLYQDFHHVMMTKTGSNKVKAIILDQNEDISECPQLRAEGLSTMRGLIILILYHKNFSGSLNFLSNNLQYLLWHGYPFASLPLDFEPYRLVELNMPYSNIQRLWEGRKVLPHLKRVDLSNSKYLTETPNFAGSRRLEQLDLTGCISLSHVHPSIELLEKLAFLSLEGCSSLVSLDLDTTSNLYSLKVLHLSGCTELRSTPDFTGVSNLEYLDIDQCVSLSMVQSIGDLSKLKFLSLRDCKNLVSIPGNANTMTSLITLDLCGCSKLTNLPLLGQTPVSAENIYLSDDELASSIYLGFLVFLDVGFCNLSEVPDAIEELWHLERLNLEGNDFVSLPSSLGLLPRLAYLNLAHCSRLHFLPELKLCATASLGGSYFKTVSGSHNHRSGLYIFNCPFLQIPDGGQNLAFSWLERLVKNPCHFRCGFDIVVPGNIIPQWFDHQFMGYSRVRIAECVSKSDNWLGFAFCVAFKKMYHPTMFGSSEDSFSSFLPYSLYLSFENEQTEETFDMPLWLKFDGLNSEHLWIIYISRPHCHFVTTGAHITFKARPGLELKTWGLRMVFESDNFNPLSELVTNIEVNEVEYPPLDYEHESSSNSRHKIQLPYNWLLTEDVHEADSSSGSKFQLPYNWHVTEEEENESWQVNMKNTY. 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05826 1224 Pfam TIR domain 80 247 IPR000157 GO:0007165
Seca4g05826 1224 SUPERFAMILY Toll/Interleukin receptor TIR domain 70 222 IPR035897 -
Seca4g05826 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 508 IPR027417 -
Seca4g05826 1224 Pfam C-JID domain 1006 1140 IPR045344 -
Seca4g05826 1224 Pfam Leucine Rich Repeat 669 685 IPR011713 -
Seca4g05826 1224 ProSiteProfiles Leucine-rich repeat profile. 899 920 IPR001611 GO:0005515
Seca4g05826 1224 SMART till_3 79 219 IPR000157 GO:0007165
Seca4g05826 1224 PRINTS Disease resistance protein signature 280 295 - -
Seca4g05826 1224 PRINTS Disease resistance protein signature 449 463 - -
Seca4g05826 1224 PRINTS Disease resistance protein signature 356 370 - -
Seca4g05826 1224 PRINTS Disease resistance protein signature 759 775 - -
Seca4g05826 1224 ProSiteProfiles TIR domain profile. 78 244 IPR000157 GO:0007165
Seca4g05826 1224 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 80 775 IPR044974 GO:0006952
Seca4g05826 1224 Gene3D - 414 498 IPR042197 -
Seca4g05826 1224 FunFam Disease resistance protein (TIR-NBS-LRR class) 76 246 - -
Seca4g05826 1224 Gene3D - 253 409 IPR027417 -
Seca4g05826 1224 SUPERFAMILY L domain-like 553 977 - -
Seca4g05826 1224 Pfam NB-ARC domain 275 480 IPR002182 GO:0043531
Seca4g05826 1224 MobiDBLite consensus disorder prediction 37 67 - -
Seca4g05826 1224 MobiDBLite consensus disorder prediction 34 67 - -
Seca4g05826 1224 Gene3D - 77 250 IPR035897 -
Seca4g05826 1224 Gene3D Ribonuclease Inhibitor 782 858 IPR032675 -
Seca4g05826 1224 Gene3D Ribonuclease Inhibitor 593 781 IPR032675 -
Seca4g05826 1224 Gene3D Ribonuclease Inhibitor 859 999 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05826 Seca-Chr4 111573904 111580357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05826 757 939 WRKY Transcription Factor Family AT4G12020 34.595 4.70e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05826 - - psat:127091204 1559.66