Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05822 ATGTCTCTAATTTCCGAATGCCCAAATCAATCTTCACGCGGAAAAAAGAGACTTCAAAGTCAACTTCCTTGGCTTATTATCCACATGGCCCAGGCCATAGAAGTAAGTTTCATTTCTCCGCTTCCACACTGGACTGCTCGACTCCTTCCGCTTCCCAAACAAAAGAATCCCCTGATCTTCTGCTTCCTTTTACATGAACTGACAGAAGGCTCAAGCCAAGTTTCTTTTGGAGTCCCTCTAAGGAATTGGCAGAATATGGAGTCAAGGTTAAGGTCAAAATATTCAGGTATTTTACTTTCTTGGAGATCCTTCCTCCTGCGACCGTTTTGGGCCCTGCTGGGTCGACGGCCTTCTTTCCATCTGAGCCCATTGGGCCAGGGAGGTAGACCTTTCAGTTATTTTATGGATTTAAGTAGCATCCAAAGCTATAAATATGATGTGTTTATCAGTTTCAGAGGCAGTGACACACGCAACACTTTCGTTGATCATCTTTATGCTCACCTCATTCGAAAAGGTATTTTCGCCTTCAAGGATGACCAAAGTCTTAAGAAAGGAAAGTCCATTTCACCGCAACTTCTACATGCAATTAAACATTCACGGGTTTCTATCATTGTCTTCTCAAAACATTATGCTGAATCATCATGGTGTTTGGATGAAATGGCTGCAATTGCTGAATGCCGTGAAGAATTCAAACAAACTGTTTTCCCTGTTTTCTATGATGTGGATCCATCCCCTGTGCGAAGACAGAATGGGGTGTATGGGGATGCTTTTGTTTTACATACTGAGAAATTCAAACATGACCCTGCCAAGGTTGATAGGTGGAAGAGAGCTATGACAGATTTGGCTGGATCAGTTGGTTGGGATGTCAGGAATAAGCCAGAGTTTCGAGAGATTGAAAATATTGTTCAGGCAGTAATAAAAACATTGGGTCATAAGTTTTCAGGGGTTGCTGATGACCTTATTGGGATACAACCTCGTGTAGAATCTTTAGAAAGTCTTTTGAAATTAAGCTCATTGAATAATGACTTTCCAGTTGTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCTTGCCACTGTATTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTGAGAATGTAAGCAAAGTTTATAGAGATGGTGGTGCTATTGCTGTACAAAAACAAATTCTTCGTCAGACTTTAGATGAAATAAATCTAGAGACATACAGTCCTTCTGAAATATCTGGAATTGTAAGAAATAGGCTACACAACATAAAGGTCCTTGTAGTTCTTGACAATGTTGATCAATTCGAGCAACTTCAAGAGTTGGCTATAAATCCTAAATTGCTTCACATAGGAAGTATAATGATCATTACAACTAGGGATGAGCATATCCTAAAAGCTTATGGAGTACATGTGGTGCACGAGGTTCCACTATTGAATAGTAATGATGCTCGTGAACTTTTTTATAGAAAAGCCTTCAAAAGTGATGATCCCACTAGTGGATGTGCAAAGTTGACTCCTGAGATACTAAAGTATGTGCAAGGTCTTCCATTAGCGGTTAGAGTAGTAGGTTCTTTCTTGTGTGCTCGAAATGCAACCCAGTGGAGAGATGCCTTGTATAGACTGAGGAATAATCCAGACAACAAAATTATGGATGTGCTTCAGATAAGTTTTGAAGGATTACATTTAGAGGACAAAGAAATATTTCTACATATTGCTTGTTTCTTTAAAGGAGAGAAGGAAGATTATGTAAAGCGAATTCTAGATGCTTGTGGATTACACCCGCATATTGGAATTCAAAATATGATCGAGAGATCACTCATAACTATTAGAAACCAGGAAATTCATATGCATGATATGTTGCAAGAGTTGGGGAAGAAATTTGTTCGACAACAATTTCCTGAAGAACCAGGATCATGGAGTAGATTGTGGCTTTATCAGGATTTCCATCATGTCATGATGACAAAAACGGGATCGAACAAGGTTAAAGCCATAATTCTGGATCAGAAAGAGGATATTTCTGAATGCCCTCAGTTGAGGACTGAAGGGTTGTCAATAATGACAGGCCTTATAATTCTTATATTATATCATAAGAATTTTTTTGGAAGCCTCAATTTTCTTTCTAACAACTTGCAGTATCTTCTATGGCATGGCTACCCTTTTGCTTCTTTGCCATTAGATTTTGAGCCGTATCGGCTTGTTGAATTGAATATGCCTTATAGCAACATCCAACAACTATGGGAAGGTCGCAAGGATCTCCCCCATTTGAAAAGGGTGGATCTGAGCAACTCCAAATATCTTATGGAGACACCAAATTTTGCTGGGAGCCGAGGACTTGAGCGGCTAGATCTGACAGGCTGCATAAGCCTCTCCCAGGTCCATCCATCAATTGGACTTCTTGAAAAACTTGCTTTCTTGAGTTTGGAAGGCTGTAGTAGTCTGGTCAGCCTTGATCTTGACACGACATCTAATTTATATTCCCTGAAAGTTCTACACCTCTCTGGCTGCACTGAACTAACAAGCACACCAGATTTTACAGGGGTCTCAAATCTTGAGTACCTTGATATTGATCAATGTGTGAGTTTATTAATGGTTGATCAATCTATTGGACATCTTACAAAGCTTAAATTCTTGAGTTTGAGAGACTGCACAAATCTTGTCAGTATACCCACAAGTGTTAATACTATGACATCTCTTATTACTCTAGATTTATGTGGCTGCTTAAAACTCAAGAATTTGCCCTTGCTGGGACAGATACCAGTGTCTGCAGAAAATATTTACCTTTCTGATGATGAACTCACGTCTTCTTACTATCTGGGTTCTTTGATTTTTTTAGACGTAGGCTTTTGCAATCTAAGTAAAATCCCTGATGCTATTGGAGAGTTAATGCATTTAGAAAGGTTAAATCTAGAAGGAAATGACATTATTTCACTACCATCTTCTGTGGGGTGGCTTTCCAGTCTAGCTTATTTAAACGTAGCTAATTGCAGCAGGCTTCAATCTTTGCCTGAACTCAAATTGTGTACTTCCCCTTCAGTAGGGGGAAGGTATTTTAAAACAGTATCTGGATCTCATAATCATAGGTCAGGATTATATATTTTCAACTGTCCCTTCTTGGAGATCCCAGTAGAAGGTCAAGACTTGGCACTTTCGTGGCTAAAAAGACTGGTAGAGAATCCTTGTCACTTCCGGTGTGGCTTTGACATTGTTGTTCCTGGGAACATAATTCCACAATGGTTTTATCATCAATTTATGGGAGGTTCAAGAGTAAGGATAACAAATTCTATGTATGAGTCTGACAATTGGCTTGGCTTTGCCTTTTGTGTGGCATTTGGGGAAAACTATCATCCAACAATGTCTGGGTCTTCACATTATTCATCTTCTTCACTGGTGCCATATCCTTTTTATCTTTCTTTTGAAAGTGGACACACGGAGGAAACCTTCGATTTTCCACTTCGGTTGGACCTGCATAAGGTTGATGGCTCAAATTCAGAACATCTCTGGCTAATCTACATCTCTCGACCACACTGCCATTTTGTGACAACAGGAGCACATATCACATTTAAATCTCACCCAGGTCTGGAGATTGAAAAATGGGGGTTGCGCATGGTACTCAAGCAAGATATCTTCGAACCACTGACAGATGACGAGGTTAATCAATTAGACTTAGACTATCTTACCTTGGATTATAGCAGCAGCTCCAGGCCTATATTCCAGCTTCCTTATAATTGGTTGCTTACTGAGGATTTGCATGAAAGCAGCAGCAGCAGCTCTGGGTCCAAATTCCAGCTTCCCTATAATTGGTATGTTACTGATGAAGAGAATAACGAGAATATGGAAGTGAATGCCAAAGGAAATTATCTCTCTACTATGGGCCTCTCCACAGGCCAGCCCCTGTGA 3903 0.3989 MSLISECPNQSSRGKKRLQSQLPWLIIHMAQAIEVSFISPLPHWTARLLPLPKQKNPLIFCFLLHELTEGSSQVSFGVPLRNWQNMESRLRSKYSGILLSWRSFLLRPFWALLGRRPSFHLSPLGQGGRPFSYFMDLSSIQSYKYDVFISFRGSDTRNTFVDHLYAHLIRKGIFAFKDDQSLKKGKSISPQLLHAIKHSRVSIIVFSKHYAESSWCLDEMAAIAECREEFKQTVFPVFYDVDPSPVRRQNGVYGDAFVLHTEKFKHDPAKVDRWKRAMTDLAGSVGWDVRNKPEFREIENIVQAVIKTLGHKFSGVADDLIGIQPRVESLESLLKLSSLNNDFPVVGIWGMGGIGKTTLATVLYDRISYQFDACCFIENVSKVYRDGGAIAVQKQILRQTLDEINLETYSPSEISGIVRNRLHNIKVLVVLDNVDQFEQLQELAINPKLLHIGSIMIITTRDEHILKAYGVHVVHEVPLLNSNDARELFYRKAFKSDDPTSGCAKLTPEILKYVQGLPLAVRVVGSFLCARNATQWRDALYRLRNNPDNKIMDVLQISFEGLHLEDKEIFLHIACFFKGEKEDYVKRILDACGLHPHIGIQNMIERSLITIRNQEIHMHDMLQELGKKFVRQQFPEEPGSWSRLWLYQDFHHVMMTKTGSNKVKAIILDQKEDISECPQLRTEGLSIMTGLIILILYHKNFFGSLNFLSNNLQYLLWHGYPFASLPLDFEPYRLVELNMPYSNIQQLWEGRKDLPHLKRVDLSNSKYLMETPNFAGSRGLERLDLTGCISLSQVHPSIGLLEKLAFLSLEGCSSLVSLDLDTTSNLYSLKVLHLSGCTELTSTPDFTGVSNLEYLDIDQCVSLLMVDQSIGHLTKLKFLSLRDCTNLVSIPTSVNTMTSLITLDLCGCLKLKNLPLLGQIPVSAENIYLSDDELTSSYYLGSLIFLDVGFCNLSKIPDAIGELMHLERLNLEGNDIISLPSSVGWLSSLAYLNVANCSRLQSLPELKLCTSPSVGGRYFKTVSGSHNHRSGLYIFNCPFLEIPVEGQDLALSWLKRLVENPCHFRCGFDIVVPGNIIPQWFYHQFMGGSRVRITNSMYESDNWLGFAFCVAFGENYHPTMSGSSHYSSSSLVPYPFYLSFESGHTEETFDFPLRLDLHKVDGSNSEHLWLIYISRPHCHFVTTGAHITFKSHPGLEIEKWGLRMVLKQDIFEPLTDDEVNQLDLDYLTLDYSSSSRPIFQLPYNWLLTEDLHESSSSSSGSKFQLPYNWYVTDEENNENMEVNAKGNYLSTMGLSTGQPL. 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05822 1300 SUPERFAMILY "Winged helix" DNA-binding domain 549 653 IPR036390 -
Seca4g05822 1300 Pfam C-JID domain 1072 1210 IPR045344 -
Seca4g05822 1300 Pfam Leucine Rich Repeat 734 750 IPR011713 -
Seca4g05822 1300 FunFam Disease resistance protein (TIR-NBS-LRR class) 141 311 - -
Seca4g05822 1300 Gene3D - 316 474 IPR027417 -
Seca4g05822 1300 SUPERFAMILY L domain-like 685 1058 - -
Seca4g05822 1300 SMART till_3 144 284 IPR000157 GO:0007165
Seca4g05822 1300 SUPERFAMILY Toll/Interleukin receptor TIR domain 138 287 IPR035897 -
Seca4g05822 1300 Gene3D - 141 314 IPR035897 -
Seca4g05822 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 573 IPR027417 -
Seca4g05822 1300 Gene3D Ribonuclease Inhibitor 823 920 IPR032675 -
Seca4g05822 1300 Gene3D Ribonuclease Inhibitor 921 1057 IPR032675 -
Seca4g05822 1300 ProSiteProfiles TIR domain profile. 143 309 IPR000157 GO:0007165
Seca4g05822 1300 Pfam NB-ARC domain 336 547 IPR002182 GO:0043531
Seca4g05822 1300 PRINTS Disease resistance protein signature 421 435 - -
Seca4g05822 1300 PRINTS Disease resistance protein signature 345 360 - -
Seca4g05822 1300 PRINTS Disease resistance protein signature 514 528 - -
Seca4g05822 1300 PRINTS Disease resistance protein signature 824 840 - -
Seca4g05822 1300 ProSiteProfiles Leucine-rich repeat profile. 965 986 IPR001611 GO:0005515
Seca4g05822 1300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 145 818 IPR044974 GO:0006952
Seca4g05822 1300 Gene3D - 479 563 IPR042197 -
Seca4g05822 1300 Pfam TIR domain 144 312 IPR000157 GO:0007165
Seca4g05822 1300 Gene3D Ribonuclease Inhibitor 631 818 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05822 Seca-Chr4 111421212 111430728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05822 128 969 WRKY Transcription Factor Family AT4G12020 29.398 2.69e-86 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05822 - - psat:127091204 1621.29