Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05821 ATGGATTCTAACAGCCCCTCATCTCTGCAGATATGTAGATACGATGTGTTTCTCAGTTTCCGTGGCAACGACACTCGCAATTCTTTCACCGATCATCTTTACAATCATCTCATTAGAAGAGGTATTTTCGCCTTCAGGGATGACCATACTCTTGAGAAAGGAGAATCCATTTCACCACAACTTCTACAAGCAATTAAAGAATCACGGGTTTCCATAATTGTCTTCTCGAATAATTATGCTGCCTCAACGTGGTGTTTGGATGAAATGGCTACTATTGCTGAATGTCATCAACAATTGAAACAAACTGTGTTCCCAATTTTCTATAATGTTGATCCATCTCATGTGAGAAATCAGAATGGGGTATACCAGGATGCTTTTGTGACACACACTCAGAAATTCAATCATGATCTAGGCAAGATTGGTAGATGGAAAAAAGCTATGACGGACATAGGCAATTTGGTTGGATGGGATGTAAGAAAAAAGTCAGAATTTACAGAGATTGAAAAAATTGTCCAAGCAGTGACAAAAACATTGGGTCATAAATTCTCAAGGTTTACTAATAATCTCATTGGGATACAATCTCGTGTAGAAGAATTAGAAAAGCTTCTAAAATTGAGCTCAGAGGATGATGATTTTCGAGTTTTAGGAATCTGGGGAATGGGTGGAATAGGAAAGACTACTCAGGCTAGTGTATTGTATGATAGAATCTCCTACCGATTTGATGCTCGCTGTTTCATTGAGAATGTAAGCAAAATTTACAAAGATGGTGGTGTTATTGCTGTACAGAAACAAATTCTTCGTCAAACTCTAGATGAAAAGAATCTAGACACATATGATGCTTGTGAAATATCTGAGATTATAATAAATCGACTACACAACAACATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAATTAGAGCAATTTCAAGAATTGGTTATAAATCCTAATTTTCTTGGCAAAGGAAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATGTGGAGCAAATAAAGTTCACGAGGTTCCACTACTGAGTAATACTGATGCTTCTGAACTTTTTGTTAGAACTGCCTTCAAAAGTGGAGAACAGAATAGTAGTTGTGTTGAGTTGATTCCAGAGGTACTAAAATATGCTCAATGTCTTCCATTAGCAATTAGAGTAGTTGGTTCTTTCTTGTGTGCCCGAGATGTTACCCAATGGAGAGATGCCTTGGATAGATTGGGGAACAATCCAGACAATAAAGTCATGGATGTGCTTCAAATAAGTATTGATGGACTAACACATGAAGAGAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGGGGAGAGAGAGGATTATGTCAAGCGTATTTTAGATGCTTGTGGATTACACCCTCACATTGGAATTAAAAGGATCCTTGAGAAATCACTCATCACCATTAGAAACCAGGAAATTCATATGCATGAAATGTTACAAGAATTGGGGAAAAAAATTGTACGGCACCAATATCCTGAAGAGCCCGGATCGTGGAGTAGATTATGGCGTTACAAGGATTTCTATCATGTCTTGATGACAGAAACCGGAACAAACAATGTTAAAGCCATAGTTCTAGATCAAAAAGAGAATATCTCCCACTGCAGGGTTGAAGGATTGTCGAATATGAAGAACCTTAGATTGCTCATATTATATCATAAGCATTTTTTGGGAAGCCTTAGTTTTCTTCCTAACCAGCTGCAATATCTTTTGTGGCATGGATACCCTTTTGCTTCTCTGCCATCAAATTTTGAGCCGTATTATTTGGTGGAACTGAATTTGCCTAACAGTAGCATTCAACGACTCTGGGAAGGTCACAAGGATCTCCCATTTTTGAAAAGGATGGATCTGAGCAACTCCAATCATCTTGTTGAAACTCCACAATTTCCTTGGGCTTCAAAACTTGAGCGTCTAGATCTTACCGGATGCACAAATCTATTGCAAGTTCATCCATCAATTGGACTTCTTACAGAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTTTGATCAGCCTTGATTTCGACAATCTATCAAATTTAAGTTCTTTGAAAGTTTTATGCCTCTCTGGTTGCACGGAACTAAAAAATATGCCAAATTTTAGAAGGGCAATAAACCTTGAGTATCTTGATATGGATCGATGTAAAAGTTTATACACAGTTAATGAATCTATTGGGGCTCTTACAAAGCTTAGATTCTTGAGTATGAGGGAATGTCGTAATATTGTCACTATACCCAATAGTGTCAATAACATGACATCTCTTATAACTTTAGATTTATGCAAATGTTCAAATTTCATGAATCTCCCTTTGACAGAGACTTTCAGCTCTTCTTTATATTTGAAATCTTTGATTTCTCTGGATGTAAGCTTCTGCAATCTACATGAAGTACCTGATGCTCTTGGAGACTTGTGGATTTTGGAAAGACTGAATCTACAGGGAAACAACTTTGTGACACTACCTTCTACCATCAAGAAACTCTACAGCCTATCATATTTAAACATGGCTCATTGCCATGAGCTTCAATCTTTGCCTAGGCTCCCATCAATAAGTGCTTCATCAGTGGGAAGATATTTTAAAACAGCATCTGGATCTCGTGATCACAGGTCAGGATTATATATTTTCGATTGCCCCAAGGTGGCTGATTTGTTGTTCGTAGACAAATCGTTTACATATTGCAACCGCTATGCATTTAAATGGCTTAAAAGAATAGTTAAGGAACCCCACCATTTCAGATGTGGTTTTGACATTGTTCTTCCTTGGGATTTGGAAATGATTGATTCCCCAAGAAATCTTATTATTCCAGAATGGTTCGATCATCAATTTCGTGGGGGTTCAGTGGTAAGGATAATGCACTTTGATGTGAATGATAGTTGGATTGGCTTTACCTTTTGTGCAACATTTGAGGTAAACAATCATATTGCAATTCCTAGTTCTTCACATCATTCATTTTCCACGTCACTACCACATCTCTTTTTTCTTTCTTTTGAAAGCGAACACACAGAAGAGCGCTTTGATATGCCATTTAATTTGGAACTGGACAAGATTGATGGCTCAAAACATCTTTGGATAATCTATATCACTCGACAACACTGTCATTTTGTGAAAACAGGAGCACATATCACATTTAAAGCCTACCCAGGTTTAGTAATAAAGAGCTGGGGATTGCGCATGCTCCAGGAAGATATAAATTATCTTCCATTGTCATGGAAAAACAATATTGTGATTGGTTATGTAAATGAAAGCAGCAGTAACTTTGAGCCTAAAACCCAACTTCCTTACAATTGGTTAGTTTCTGAGGAAGATGAAGTTGAGAATGAAGAAGCCCAAGGGAAAGAAAATAATCTCTCTAATCTGGGCCTTTTGATAGGCTGA 3411 0.3723 MDSNSPSSLQICRYDVFLSFRGNDTRNSFTDHLYNHLIRRGIFAFRDDHTLEKGESISPQLLQAIKESRVSIIVFSNNYAASTWCLDEMATIAECHQQLKQTVFPIFYNVDPSHVRNQNGVYQDAFVTHTQKFNHDLGKIGRWKKAMTDIGNLVGWDVRKKSEFTEIEKIVQAVTKTLGHKFSRFTNNLIGIQSRVEELEKLLKLSSEDDDFRVLGIWGMGGIGKTTQASVLYDRISYRFDARCFIENVSKIYKDGGVIAVQKQILRQTLDEKNLDTYDACEISEIIINRLHNNIKVLLVLDNVDQLEQFQELVINPNFLGKGSRIIITTRDEHILRVCGANKVHEVPLLSNTDASELFVRTAFKSGEQNSSCVELIPEVLKYAQCLPLAIRVVGSFLCARDVTQWRDALDRLGNNPDNKVMDVLQISIDGLTHEEKEIFLHIACFFKGEREDYVKRILDACGLHPHIGIKRILEKSLITIRNQEIHMHEMLQELGKKIVRHQYPEEPGSWSRLWRYKDFYHVLMTETGTNNVKAIVLDQKENISHCRVEGLSNMKNLRLLILYHKHFLGSLSFLPNQLQYLLWHGYPFASLPSNFEPYYLVELNLPNSSIQRLWEGHKDLPFLKRMDLSNSNHLVETPQFPWASKLERLDLTGCTNLLQVHPSIGLLTELAFLSLQNCSSLISLDFDNLSNLSSLKVLCLSGCTELKNMPNFRRAINLEYLDMDRCKSLYTVNESIGALTKLRFLSMRECRNIVTIPNSVNNMTSLITLDLCKCSNFMNLPLTETFSSSLYLKSLISLDVSFCNLHEVPDALGDLWILERLNLQGNNFVTLPSTIKKLYSLSYLNMAHCHELQSLPRLPSISASSVGRYFKTASGSRDHRSGLYIFDCPKVADLLFVDKSFTYCNRYAFKWLKRIVKEPHHFRCGFDIVLPWDLEMIDSPRNLIIPEWFDHQFRGGSVVRIMHFDVNDSWIGFTFCATFEVNNHIAIPSSSHHSFSTSLPHLFFLSFESEHTEERFDMPFNLELDKIDGSKHLWIIYITRQHCHFVKTGAHITFKAYPGLVIKSWGLRMLQEDINYLPLSWKNNIVIGYVNESSSNFEPKTQLPYNWLVSEEDEVENEEAQGKENNLSNLGLLIG. 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05821 1136 Pfam Leucine Rich Repeat 600 617 IPR011713 -
Seca4g05821 1136 SMART till_3 13 153 IPR000157 GO:0007165
Seca4g05821 1136 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 180 - -
Seca4g05821 1136 Pfam C-JID domain 946 1071 IPR045344 -
Seca4g05821 1136 Gene3D Ribonuclease Inhibitor 724 869 IPR032675 -
Seca4g05821 1136 Pfam NB-ARC domain 199 418 IPR002182 GO:0043531
Seca4g05821 1136 Pfam TIR domain 14 183 IPR000157 GO:0007165
Seca4g05821 1136 Gene3D Ribonuclease Inhibitor 531 717 IPR032675 -
Seca4g05821 1136 SUPERFAMILY L domain-like 505 862 - -
Seca4g05821 1136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 443 IPR027417 -
Seca4g05821 1136 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 156 IPR035897 -
Seca4g05821 1136 Gene3D - 349 433 IPR042197 -
Seca4g05821 1136 Gene3D - 12 176 IPR035897 -
Seca4g05821 1136 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Seca4g05821 1136 PRINTS Disease resistance protein signature 691 707 - -
Seca4g05821 1136 PRINTS Disease resistance protein signature 384 398 - -
Seca4g05821 1136 PRINTS Disease resistance protein signature 214 229 - -
Seca4g05821 1136 PRINTS Disease resistance protein signature 291 305 - -
Seca4g05821 1136 SUPERFAMILY "Winged helix" DNA-binding domain 419 524 IPR036390 -
Seca4g05821 1136 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 707 IPR044974 GO:0006952
Seca4g05821 1136 Gene3D - 177 345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05821 Seca-Chr4 111376278 111383904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05821 691 857 WRKY Transcription Factor Family AT4G12020 32.738 9.46e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05821 - - var:108332841 1373.22