Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05810 ATGCCACAATCATCTGAGATAAATGAATGGGTTCCAAATTGTGATGAAAAAGTAAAGCCTAAGTTAGGGAAGATATTTGATACATTAGAAGATGGTGAAGAGTTTTACAAAAGATATGCACACAGTGTTGGATTTAGCGTGCATTGCTCATCAGAAAGTAAAAACAAAGATGGAGTAAAGCGGTGGAAGTATTTTGTTTGCTCAAAAGAAGAGGGAGGTAAATATGAGCTTGCTCGATTTCATGAGAGTCATACACATGCACTTGCCACACCTAGGAAAAGACAATTTCTTAGATCAGTAAGAAAAGTGAATCCTGTTCATAGGAGTTTACTATATGCATATAATAGAGCAAACATTGGGCCTTCAAAGACATATCAGTTATTGAAAGAACAAGTTGGAGAGACTCCAGATGAATTTGAATTAGCATGGAAATCTATCATGGTTAAGTTTGAGTTGCAAAATCATGATTGGCTCTCACATATGTTTGACATTCGAAATATGTGGATCCCAGCTTACTTTAAAAACATATTTTTGGGTGGAATATTGAGAACAACCTCAAGGTCAGAAAGTGAAAATTCCTTTTATGGAAATTTTTTGAATCCTAATGTTAGTTTGGTTGAATTTTGGATGAGGTTTGATTCTGCTATAGAAGCACAAAGGCATAAGGAGTTGCTTGCTGATAATGATTCACTTCATTCCCAACCGGTGCTAAAGTTGGATCGTGGTTTAGAGAAACATGGAAGAGATATTTATACTCGTGAGAACTTTTACATATTTCAAAAAGAGTTGTGGATTGCATGTGTAGACTGTGGAGTTGAAAGTAAGATAGAAAAAGATGGAATGGAAATAATACATATAGCTGATAATAGTGAATCCAATGGAAAAGTACGAGAAGTGGTTTATAATGCTTTTAATCATAGTGCAGATTGCTCATGCAAAATGTTTCAATCTCAATGCATACCATGTAGACATATACTTTGTGTTTTGAAGGGGAAAGGTTTGAATGAAATACCAAGTAATTATATTGTGCATAGGTGGACCAAGTTGGCAACTAGCAAGCCTATTTTTTATGTTGATGGGGAAGTCTTGGAAGGGTGTTCTGAAATAAAAAATGAGAGTCAGCTCATAGCAGATGCATGGAATCATTTATTTACATGTATGCATAAGGCTGGACAATGCAAGGAAAAATTGCTTTTGCTAATAAATGGAGCTGTTAACATTGAAAAGCAATTGACTGAATTTAAGGATGATTCTACACAGACCAAGGAAAAAGAATTAGAGACTTTCATTGGATGCAATCTTACTGACGAAGTGGAAATTCATCCACCACATTTTGCAAAGACAAAAGGAAGTGGTAAACGAATCAAAGGAGGAAAGGAGAAGCCTGTTGAACAGCAACAGAAAAGAACTAGACTTTGCAGAACATGTGGCCAACATGCATATCATGATAGTCGTAATTGCCCCCAAAAATCATCTCCCTAA 1482 0.357 MPQSSEINEWVPNCDEKVKPKLGKIFDTLEDGEEFYKRYAHSVGFSVHCSSESKNKDGVKRWKYFVCSKEEGGKYELARFHESHTHALATPRKRQFLRSVRKVNPVHRSLLYAYNRANIGPSKTYQLLKEQVGETPDEFELAWKSIMVKFELQNHDWLSHMFDIRNMWIPAYFKNIFLGGILRTTSRSESENSFYGNFLNPNVSLVEFWMRFDSAIEAQRHKELLADNDSLHSQPVLKLDRGLEKHGRDIYTRENFYIFQKELWIACVDCGVESKIEKDGMEIIHIADNSESNGKVREVVYNAFNHSADCSCKMFQSQCIPCRHILCVLKGKGLNEIPSNYIVHRWTKLATSKPIFYVDGEVLEGCSEIKNESQLIADAWNHLFTCMHKAGQCKEKLLLLINGAVNIEKQLTEFKDDSTQTKEKELETFIGCNLTDEVEIHPPHFAKTKGSGKRIKGGKEKPVEQQQKRTRLCRTCGQHAYHDSRNCPQKSSP. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05810 493 ProSiteProfiles Zinc finger SWIM-type profile. 297 333 IPR007527 GO:0008270
Seca4g05810 493 MobiDBLite consensus disorder prediction 453 468 - -
Seca4g05810 493 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 105 IPR031052 GO:0006355
Seca4g05810 493 SMART 26again6 308 335 IPR006564 GO:0008270
Seca4g05810 493 MobiDBLite consensus disorder prediction 443 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05810 Seca-Chr4 111178230 111180531 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g05810 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05810 - - mtr:112420857 526.939