Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05801 ATCTATAGGGCATTGGCATATATTCATACTGTACCTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCTCTAACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTCTGGTATGTTGGTCCGCATCCTTCTTGTGCATATCACTACTTTATAGTTATACATTTTTTCGGTTCCCGCAGATAAAAGCTCATCCTTGGTATAAGTTGGTGCAACAATCCATGGATCAGGTTTTTCACAAGCGAATGCCTCTTGAAGCAACTAACCTTACATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTGTAGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCCCGGCTACCTAATGGTCGTCTGCTGCCTCCCTTTTTCAACTTTAAACAAGAATTAGCTGGAGCACCCCTTGAAGTGGTCCACAAACTCATCCCAGACCATGTCAGGCAACAAACTGGTCTTGGCTTCCCATATCCGGCTAGTACATAA 531 0.435 IYRALAYIHTVPGVCHRDVKPQNILVDPLTHQVKLCDFGSAKVLVCWSASFLCISLLYSYTFFRFPQIKAHPWYKLVQQSMDQVFHKRMPLEATNLTSRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRLLPPFFNFKQELAGAPLEVVHKLIPDHVRQQTGLGFPYPAST. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05801 176 Pfam Protein kinase domain 1 44 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05801 176 SUPERFAMILY Protein kinase-like (PK-like) 1 137 IPR011009 -
Seca4g05801 176 Gene3D Transferase(Phosphotransferase) domain 1 49 163 - -
Seca4g05801 176 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 47 - -
Seca4g05801 176 SMART serkin_6 2 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05801 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
Seca4g05801 176 Gene3D Transferase(Phosphotransferase) domain 1 1 48 - -
Seca4g05801 176 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05801 Seca-Chr4 111031598 111036879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05801 3 128 Core Cell Cycle Gene Families AT1G76540 25.137 1.56e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g05801 Pkinase 5.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05801 K14502 - pvy:116132267 247.284