Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05789 ATGAACCACATGAAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCCCTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGTTGTTGCTATAAAGAAGGCCTTGCAGGACAAGCGGTACAAAAATCGTGAATTGCAATTAATGCGTGTGATGGATCATCCAAATTTAATTTCCCTGAAGCATTACTTCTTCTCTACAACATGCAAAGATGATCTATTACAACATGCAAAGATGATCTATGTCCCTGAGACAATGTACCGAGTTCTAAAGCACTACAATAGCATCAACCAAAGAATGCCTTCTGCGAGTCATTCTCGGATTGCGATTGTGGCAACAACTGCAGCTGTTGCTGCTGGGGTGGCGGTAGCACCAGAGGTGCTGGTTGCGGTGGTTGAAGGTGGTTCGACCCCAACGGCATAG 438 0.4589 MNHMKTISYMAERVVGPGSFGIVFQAKCLETGEVVAIKKALQDKRYKNRELQLMRVMDHPNLISLKHYFFSTTCKDDLLQHAKMIYVPETMYRVLKHYNSINQRMPSASHSRIAIVATTAAVAAGVAVAPEVLVAVVEGGSTPTA. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05789 145 Pfam Protein kinase domain 9 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05789 145 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 108 - -
Seca4g05789 145 FunFam Glycogen synthase kinase-3 beta 1 88 - -
Seca4g05789 145 SUPERFAMILY Protein kinase-like (PK-like) 8 98 IPR011009 -
Seca4g05789 145 ProSiteProfiles Protein kinase domain profile. 9 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05789 145 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05789 Seca-Chr4 110856115 110859777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05789 9 110 MAP Kinase Gene Family AT2G01450 33.945 2.48e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g05789 Pkinase 6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05789 K14502 - cave:132180991 173.326