Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05783 ATGGAAGAGGACGATAGTTACAGAAGGAAGTCGAAGATTTTACTCGTTTCCGTCTTGCTGGTTGCTTCCCTCGCCGTATTTGCTTCGCTGGTTGCTTTCGCTTACTACTGCCACATCCGCAACAAGGTCTCCAGGCGCCGCAAAAGCCAGAAAGTTGAAGACGCTAGCTTTAACGAGAAAAGTGACTTTGCAAACCTGCAAGTTGTTGCTGAGAAAGGACTTCGGGTGTTCACTTTCAAGCAGCTGCATTCTGCTACAGGGGGCTTCAGCAAGTCAAATGTGATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATGATGGCAGGAAAGTTGCAATTAAATTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAGTTTAAAGTAGAGGTTTGTTTCCTCTTAGAACATTTTGGCCAGCCCTGTTTCTTTTCCAGAAATTGTGGGAAAGGGAATGTCTTATTCTTGCAAATGCACTTGATTTCCCCTGTGATCAAAACAGTGAAATTTGTAGATTATGAATCACCTTATGTGGAATTGCTAAGTCGGTTGCATTCTCCGTATTTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAACCATAAATTGCTGGTGTATGAGTTTATGGCGAATGGTGGCCTGCAGGAACATCTTTATCCCATCAGCAATTCTAATGTTATGCCCATGAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAAGGGTTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAAAAATTTCATGCCAAAGTGTCTGATTTTGGATTGGCTAAACTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGTGTTTTAGGCACCCAGGGATATGTTGCCCCAGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTCTTGGAGCTACTCACTGGCCGAGTTCCAGTTGATATGAAGAGACCTCCAGGGGAAGGCGTTCTTGTTTCTTGGGCTTTGCCACTGTTGACTGATAGAGATAAGGTTGTAAACATAATGGATCCTGCACTGGAGGGACAATATTCTATGAAAGAGGTTATCCAGGTAGCGGCAATTGCTGCAATGTGTGTGCAACCAGAGGCTGATTATCGACCTCTCATGGCTGATGTTGTGCAGTCATTGGTTCCACTGGTGAGGACTCACAGGTCCACCTCAAAGGTTGGCAGCTGCTCTAGTTTCAATTCCCCTATGTTGTCCCCAGCCCAACATCTAGTTAATGCAAATATGTAA 1344 0.4427 MEEDDSYRRKSKILLVSVLLVASLAVFASLVAFAYYCHIRNKVSRRRKSQKVEDASFNEKSDFANLQVVAEKGLRVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVCFLLEHFGQPCFFSRNCGKGNVLFLQMHLISPVIKTVKFVDYESPYVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPISNSNVMPMKLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDRDKVVNIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRTHRSTSKVGSCSSFNSPMLSPAQHLVNANM. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05783 447 Gene3D Transferase(Phosphotransferase) domain 1 213 430 - -
Seca4g05783 447 PANTHER OS07G0668900 PROTEIN 55 137 - -
Seca4g05783 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Seca4g05783 447 ProSiteProfiles Protein kinase domain profile. 89 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05783 447 Gene3D Phosphorylase Kinase; domain 1 48 140 - -
Seca4g05783 447 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Seca4g05783 447 FunFam Receptor-like serine/threonine-protein kinase ALE2 212 429 - -
Seca4g05783 447 Pfam Protein tyrosine and serine/threonine kinase 181 412 IPR001245 GO:0004672|GO:0006468
Seca4g05783 447 SUPERFAMILY Protein kinase-like (PK-like) 73 413 IPR011009 -
Seca4g05783 447 Gene3D Phosphorylase Kinase; domain 1 173 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05783 Seca-Chr4 110727358 110732471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05783 1 438 Receptor kinase-like Gene Family AT3G58690 68.950 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca4g05783 PK_Tyr_Ser-Thr 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05783 - - gmx:100804893 679.863