Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05776 ATGGCTGAGAGAATTTGCGTATATGATGAAGAAAAGAGTGAAGGTAGTGGAGGTGGTGTTGAAGGCAGGATGATCTCTTCTTCGTCTCCAAGTCCAAGAAAGCGTTCTTTGTTGGACTTAAACGAAGAAGCTATGGATGATATTGGAGATGATAGCATGAGTGGTGGTGAGATGTCATCATCACAAGAAGGGAATTTGAGTAGTAGCAATAATAACTCAAGTGATCAAGAAGGGAAAGAGCGTGCAACTACAACTACGGTTAGGCAATATGTGAGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTCCATTTAGCTTTTGTGCATGCCGTTGACAGGCTTGGTGGCCAAGAAAGAGCAACACCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATCGGAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCCCAAAATAGGGCAATGCAAGGAAGGCATCATATTTTGGATGTGTACGGAAGAGCTAATGCTCAAGGACAATTTGGGGTTGACAATAAGAACTATCTGCCTTTAATGAAACAACCGTATGAAGTCAAAGCTCATGGCTCTTCAAGATTTCACCCGACTGGGCTTTTCAATAATCACATGATCATGAGATCAAGTTCAATGTGGGACAAAGATCTATATGAGGCAAGTTCACATATATTTGATGTGAGGGATGAAATAACAAGAAATGGACCTCTTAGTCTTAGATCTAACCAACTAGTTGAAGAAAAGAAGTGGCTTCCTCGGGGAATGGCTGGATCACAAGGAAATGACAAACATGAATCTATAAGCATATCTCGGGATGACAAATATGGTGCACAATGGAGAGCTTACTCTACTTCTAACAATAATCAATACCAACGTAGTTCCTGCACTTCTATCTTCACTGGCCACGCCAAGATTAATGCTGAGATTCATGATCGAAAAGATCGAATGCTAGAGTTCACAAATCAGTTTCAAGTATCGGAGCAAAGCCATGTGAAAGCCCAATTAGAAAGGTTAAATGAGAAGAAAGTTTCACCAAGCTTTCTAGAGCTAAAGTTAAGTCAGGGTTCAGGAAATGTTAGAGATCACCGGATGAACATAAATTCAGAAAGTGAACAAGAAATCAACACGATACTTTCTCTCTAA 1185 0.4076 MAERICVYDEEKSEGSGGGVEGRMISSSSPSPRKRSLLDLNEEAMDDIGDDSMSGGEMSSSQEGNLSSSNNNSSDQEGKERATTTTVRQYVRSKMPRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRAMQGRHHILDVYGRANAQGQFGVDNKNYLPLMKQPYEVKAHGSSRFHPTGLFNNHMIMRSSSMWDKDLYEASSHIFDVRDEITRNGPLSLRSNQLVEEKKWLPRGMAGSQGNDKHESISISRDDKYGAQWRAYSTSNNNQYQRSSCTSIFTGHAKINAEIHDRKDRMLEFTNQFQVSEQSHVKAQLERLNEKKVSPSFLELKLSQGSGNVRDHRMNINSESEQEINTILSL. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05776 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 71 293 IPR046955 GO:0003700
Seca4g05776 394 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Seca4g05776 394 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g05776 394 MobiDBLite consensus disorder prediction 54 87 - -
Seca4g05776 394 FunFam Myb family transcription factor 94 152 - -
Seca4g05776 394 Pfam Myb-like DNA-binding domain 98 148 IPR001005 -
Seca4g05776 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 151 IPR006447 GO:0003677
Seca4g05776 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 152 IPR017930 -
Seca4g05776 394 MobiDBLite consensus disorder prediction 1 87 - -
Seca4g05776 394 Gene3D - 95 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05776 Seca-Chr4 110625839 110629939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05776 70 157 G2-like Transcription Factor Family AT2G42660 68.182 6.15e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g05776 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05776 - - lang:109337615 429.483