Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05716 ATGGGAATGAAGAGCACAGGAGGAGAGATTGTTCAAGTCCAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATCGTCACAGTAAGGTTTACACTGCAAAAGGACCTCGTGATCGCAGGGTTAGGCTATCAGCACACACAGCTATTCAATTCTATGATGTTCAAGACCGTCTTGGCTATGACAGACCCAGCAAAGCTGTGGATTGGCTCATCAAAAAGGCAAAATCTGCCATTGATAAGCTTGCTGAGCTTCCTCCATGGCACCCAACTCCTACTAATAATGCCACAGAAGAAGGCCAAGAGACAGAACAGAATGCAGGGTCAAGTGAAATGGCTATTGCAGCAGAACACTCTGAGTCTTCTGGTTACAATTTTCAGCTCCAAAGGCAATTAGGTGAGGACCCAGATAACCATCACTCAGCTTTTATTCCTTCACCTATTGACACTGATGCCATAGCCTTTTTTCCCACAACCTCAGCTACTTCCTCTATCAATTTCCAAAGCTACCCTCCTGATATAATCTCTAGAACCAACAACTCCACACAGGACCTTGGTCTTTCTCTTCATTCTTTTCAAGATCCTGGTTTGATTCATGGCCAATCCCAAGGTGGTGCTAATCAAACACCTTCTAATGACCAAACCCTTTTCTCTGGCTCAACCCCTGTTGGGTTTGAGGCCAATTATCACAGGATTGTGACTTGGAACAATGATGCAACTACAGATATGAACAGAACCGGGTTCATGGTCAATTCACCTGCATTTCTAGGCCAAGGTTCACAATATTCCCATAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGATATTCCAATGGCTTCCTCAGATCATCACAATCATCATAAGTCTCAATCAATTCACCAAGCTTCCATCTTTGGTAGCAGGTTTCTGTCTGATGCATTACCTGGTTTCTGCATTCCTGCTAGAATTCAAGGTGAGGATGAGAGCCATGGTGTTGGTTCTGACAGGCCATCATCTTCTCCTCCTAATTCTCATCACTGA 1038 0.447 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWHPTPTNNATEEGQETEQNAGSSEMAIAAEHSESSGYNFQLQRQLGEDPDNHHSAFIPSPIDTDAIAFFPTTSATSSINFQSYPPDIISRTNNSTQDLGLSLHSFQDPGLIHGQSQGGANQTPSNDQTLFSGSTPVGFEANYHRIVTWNNDATTDMNRTGFMVNSPAFLGQGSQYSHRGTLQSSFSPSLRPWNDIPMASSDHHNHHKSQSIHQASIFGSRFLSDALPGFCIPARIQGEDESHGVGSDRPSSSPPNSHH. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05716 345 MobiDBLite consensus disorder prediction 325 345 - -
Seca4g05716 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 283 IPR005333 GO:0003700
Seca4g05716 345 MobiDBLite consensus disorder prediction 84 109 - -
Seca4g05716 345 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Seca4g05716 345 MobiDBLite consensus disorder prediction 90 109 - -
Seca4g05716 345 Pfam TCP family transcription factor 23 118 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05716 Seca-Chr4 108766609 108769695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05716 8 345 TCP Transcription Factor Family AT3G15030 44.110 1.81e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g05716 TCP 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05716 - - gmx:100814907 595.119