Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05712 ATGCTCATGGCCATAGTTTCCCTATCAGTAGTCTTAGTTTTGGTGTTAGCGCTTCACCTCTATGCAAGGTTCATCCTTAAACGCCAAGCTCGCCGTAGAGCCGCAATTCACCAACTTAGCCTCACCGTGGCTCATGCTCACACCCAATTCACCGAACCACCCAACAGAGGACTCGACCCTACCGTCATCGCGGCTCTTCCCACCTTCATCTTCAAAAGAAAGGTACCTCAACAAGAAGAAGAAAATCGCAATCATGGTGATTATTCCTCTAGTGTGATTGAATGTGCGGTGTGCTTGAGTGCTTTAGAAGATGAAGAAACCGTGCGGTTGCTTCCCAATTGCAAGCACACTTTCCACGTTGGTTGCATTGATACGTGGCTCGCTTCGCATTCCACGTGTCCAATTTGTCGAACCAAGGCTGAGCCTCGGCTTGAACCGCACCCACGTGAGGGCCCCACTGGGTTGGGTCTTAATGCTGCACCGTCTGCTCCGGTTTTATTTGAACCACCTGCTGAAGGCACATCAGACGGTGCTAGTGGTACTATTAGTGGGTCACCCAAAATCAATGGTTCAAATTCACGGTTGAGTTCGTTCCGAAGGATGCTTAGTAGAGAGAGATCGTTCAGGAGAATTCAACCTTCTAGCCGTGAAGATATTGATCAAGATTTAGAGAGGCAGTGA 681 0.489 MLMAIVSLSVVLVLVLALHLYARFILKRQARRRAAIHQLSLTVAHAHTQFTEPPNRGLDPTVIAALPTFIFKRKVPQQEEENRNHGDYSSSVIECAVCLSALEDEETVRLLPNCKHTFHVGCIDTWLASHSTCPICRTKAEPRLEPHPREGPTGLGLNAAPSAPVLFEPPAEGTSDGASGTISGSPKINGSNSRLSSFRRMLSRERSFRRIQPSSREDIDQDLERQ. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05712 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 179 - -
Seca4g05712 226 CDD RING-H2_EL5-like 94 137 - -
Seca4g05712 226 MobiDBLite consensus disorder prediction 142 226 - -
Seca4g05712 226 SMART ring_2 95 136 IPR001841 -
Seca4g05712 226 MobiDBLite consensus disorder prediction 199 226 - -
Seca4g05712 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 143 IPR013083 -
Seca4g05712 226 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Seca4g05712 226 MobiDBLite consensus disorder prediction 176 198 - -
Seca4g05712 226 Pfam Ring finger domain 94 137 IPR001841 -
Seca4g05712 226 FunFam E3 ubiquitin-protein ligase ATL6 46 143 - -
Seca4g05712 226 SUPERFAMILY RING/U-box 94 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05712 Seca-Chr4 108666901 108667581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05712 1 226 C3H Transcription Factor Family AT2G42360 46.725 1.38e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05712 K19038 - gmx:100780265 239.195