Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05708 ATGGCACAATTACCTCCAAAGATTCCAAACATGTCACCTAGTTGGCCAGATTTTTCTTCTCACCAAAAAATGCCAACATCCCTTGCAAGCATGTCACCACCAAATAACATTGCAACAACAAACACAAACCATTACCATAATCAGAGCCAGAACCCTTCATGGGTGGATGAGTTTCTTGACTTTTCCTCTGCCAGGCGTGGTGCTCACCGCCGGTCGGTGAGTGATTCCATAGCCTTCCTTGAGGCACCAATGCTTGATGATGATCATGAACATTGTCGTACCAAACATGGGAACATTAATAATGAGAATGAGTTTGACAAGTTTGATGATGAACAATTCATGAACATGTTTTCTGATGAAATCTCTGGGGTCCACAATATGCCACCAACATTGTCCTCTTCCAATCCTTCAAGTCCTTCGGATCAGAATTTCATCAATGATGAGAAAGAGAACAAGCAGGAGGAGGAGCAGAAGAAGGAGGAAGTTGAAGAGTATCAGCATCAGCAATTGAAAAATGAGCCAGATGAGGTTGAAAGCGAATGCAATCAGGAATTTCCACAGGCTACAAATAATACCAATACTACTACTTCTTATGACAGAATCACTGACCCCAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCTGCGCAGAGGTCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTGGAGAGAAGTGTAACTTCATTACAGGCTGAGGTTTCAGTGCTGTCTCCGCGGGTTGCATTTTTGGATCATCAACGCTTGCTTCTAAATGTTGACAACGGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAGATCTTCAAAGATGCTCATCAAGAGGCACTGAAGAGAGAGATAGAGAGACTGAGACAAGTGTATCACCAACAGAGCCTCAAGAAGATGGAAAATGCTGCAGGCTCACCATCACCAAAGCCAATATGTGATCCTCAGCCAGAAAAGGAACAACTTCTCAATGTATGA 996 0.4357 MAQLPPKIPNMSPSWPDFSSHQKMPTSLASMSPPNNIATTNTNHYHNQSQNPSWVDEFLDFSSARRGAHRRSVSDSIAFLEAPMLDDDHEHCRTKHGNINNENEFDKFDDEQFMNMFSDEISGVHNMPPTLSSSNPSSPSDQNFINDEKENKQEEEQKKEEVEEYQHQQLKNEPDEVESECNQEFPQATNNTNTTTSYDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNGALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQSLKKMENAAGSPSPKPICDPQPEKEQLLNV. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05708 331 MobiDBLite consensus disorder prediction 145 178 - -
Seca4g05708 331 SUPERFAMILY Leucine zipper domain 205 259 IPR046347 GO:0003700|GO:0006355
Seca4g05708 331 Coils Coil 144 171 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 13 44 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 125 144 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 121 199 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 182 199 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 1 44 - -
Seca4g05708 331 FunFam Basic leucine zipper 61 204 277 - -
Seca4g05708 331 Gene3D - 204 272 - -
Seca4g05708 331 CDD bZIP_plant_RF2 206 256 IPR044759 GO:0003700|GO:0006355
Seca4g05708 331 Coils Coil 284 304 - -
Seca4g05708 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 203 255 IPR004827 GO:0003700|GO:0006355
Seca4g05708 331 SMART brlzneu 201 265 IPR004827 GO:0003700|GO:0006355
Seca4g05708 331 PANTHER BASIC LEUCINE ZIPPER 34 1 317 - -
Seca4g05708 331 MobiDBLite consensus disorder prediction 302 331 - -
Seca4g05708 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 208 223 IPR004827 GO:0003700|GO:0006355
Seca4g05708 331 Pfam bZIP transcription factor 205 248 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05708 Seca-Chr4 108588692 108593507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05708 1 282 bZIP Transcription Factor Family AT3G58120 55.592 5.95e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g05708 bZIP_1 3.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05708 - - gmx:100101874 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05708 4 108588692 108593507 Seca4g05708 4 108588692 108593507 ECH