Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05694 ATGGATGATGGAGAAATTTCAAACGGTTTCCCTCTTCATCAAAACGCAACCGTTTCATCTCCTCCTGTTTTGAAGAGGAAAAGAAACCTCCCTGGCAACCCAGATCCTGAAGCTGAAGTGATAGCTTTATCACCAAAGACTCTGATGGCTACAAACAGATTCGTGTGTGAAATTTGCCTGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGACATAACCTTCCTTGGAAGCTGAAGCAGAGGACAAGCAAAGAAGTAAGGAAGAGAGTGTATGTGTGTCCAGAGAAAACTTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTTCAATCAGATTGGAAAGCACACTCAAAAACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCACGGAGGGATAGCTTCATCACACACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAATGCAGTATCAAATATAAACAACCCATTGGGGAGTTACAACATCATGCAACAAACTTCCCTTGGGCCTAACATGCCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACTGAGGAAACAGGTAACAATCAAACATCTAGAGGGTTATCCCTTTGGATGGCTCAAGCATCTCAGGCTCATGAGACAATGACAATAAACAACAACAATTTGCATGAGATTCATCATCAACTTGGGTCAACTACAACCCCACCTGGAGCAATATATAGTGGTGGAAACCCACTTAATAATGTTTCATGCTCAAACCCACCACCCTCTAATTATCACCTAAATTGGGTGTTTGGAAATAATAAGCTCTCATCTAATGGAACTCAAGAGCTAACAAGCACTACTACTGCTTCACTTCCACTAATGAATATTGCTAAGGATACTACAATTACTACAAACCAGCTTATTAGTGTTCCTTCCTTGTATAGCTCCCAACATCAATCCCATCAAACAACCTCAGCTGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAACAACCTCAACTGACCCATCATTCCTTGGGAGCTTAGGATTGAGATGCAATAACAACAGTAGTCCAAGACAAGATGGGAACAAATTTTGTGGGGTGGTGTACGGTTCAAGTTCAGTGCCAAAGAAATTATATCAAGATGATTTGACACAAATGCCCCCAACAAAACGACGCCACGTGCAGAATGAAGAGAGTGGTGGATGGGGACAAACTAGGGATTTTCTTGGTGTTGGCGGTGCCAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGATTTGA 1407 0.4271 MDDGEISNGFPLHQNATVSSPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAVSNINNPLGSYNIMQQTSLGPNMPTHFSSIFKPISCTEETGNNQTSRGLSLWMAQASQAHETMTINNNNLHEIHHQLGSTTTPPGAIYSGGNPLNNVSCSNPPPSNYHLNWVFGNNKLSSNGTQELTSTTTASLPLMNIAKDTTITTNQLISVPSLYSSQHQSHQTTSAANMSATALLQKAAQIGTTSTDPSFLGSLGLRCNNNSSPRQDGNKFCGVVYGSSSVPKKLYQDDLTQMPPTKRRHVQNEESGGWGQTRDFLGVGGANHLPPFINQRMDLI. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05694 468 FunFam protein indeterminate-domain 12-like 33 101 - -
Seca4g05694 468 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Seca4g05694 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Seca4g05694 468 Gene3D Classic Zinc Finger 87 178 - -
Seca4g05694 468 SUPERFAMILY beta-beta-alpha zinc fingers 125 174 IPR036236 -
Seca4g05694 468 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g05694 468 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca4g05694 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 452 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05694 Seca-Chr4 108395228 108397440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05694 21 452 IDZ Gene Family AT1G03840 51.639 2.35e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g05694 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05694 K25870 - gmx:100778666 679.093