Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05685 ATGGACAAGGTGGAACAGCTTTTTCTGTTTCTACTGCTTCTCTTTGTCTCTCCTACTTTCTCTCTCAACCAAGAGGGTCTCTTCCTCCTCCAAGCCAAACACCAACTCTCCCACCCTTCTCATTCTCTCTCTAACTGGAACCGCCGCGACGCCACCCCATGTAGCTGGACCGGCGTCACCTGTGACCGCGCCACCGGCGCCGTCACCTCCCTCCACCTCTCTGACTCAGAGCTTTCCGGTCCCTTCCCTTCCGCCTTCTGCCGCCTTCCTTCTCTCTCCATCCTCTCTCTCTCCAACAACAACCTCAACTCCTCACTCTCTGCCACCGCTCTCTCCGCCTGCTCCACCCTCCGCCGCCTTGATCTCTCCCTCAACCTCTTCTCCGGCCCCATCCCTAACACCCTCTCCCACCTCCCCTCCCTCCTTCATCTCAACCTCTCATTCAACAACTTCTCCGGCAACATTCCGGCAACATTCGGGAACTTCCGGCGACTGGAGTCGCTCTCCCTCGTCAACAACCTCCTCACCGGAAAAATACCCACTTCTCTCGGCAACGTTTCCACCTTGAAGGAGCTTCACCTCGCTTACAATGACCTTGGAGGTCCCATTCCCAGCACTTTGGGGAACCTCACAGACCTTGAGGATCTATGGCTCGCAAAATGCAACCTTGTGGGTACCATTCCTCTCTCTCTGGGGAGTCTCGTTCGGCTTTGGAACCTTGACCTGTCACAGAACATGCTCACTGGGCCCATACCGGAACCGGTTTTCACTGGGCTTACCAGCATTGTGCAAATCGAGCTATATGAGAATTTCCTCTCCGGCGAGTTGCCTCGTGGCCCTAGAATCGCCAACCTGACTCAGTTGGAACGATTCGATGCCTCGCAGAACGAGTTGACTGGGACGATTCCTGATGAGTTGTGCGGGTTGAAGAACTTGGGGTCTCTCAACTTGGATGTTAATAGTCTCGAGGGTTCTTTGCCTGAGAGCATAGCAGAGTCTGAGAACCTTTACCAGCTCATGCTGTACAACAACTCGCTCTCTGGGAGTTTGCCGAGTGGTTTGGGAAGCAAATCGCAGCTGCAGATCTTAGATGTTTCATATAACCAATTTTCCGGCGAGATTCCGGCGAGTCTGTGCCGTGGGGGAGGGTTGCAAGAACTGCTGCTAGGTTACAATTCATTTTCCGGCGAAATCCCTGAGAGTCTCGGGGATTGCAAGAGTTTGATGAGGATTCGACTTGGGAATAATAACCTTTCTGGAACTGTTCCCTATGGTCTATGGGGTCTGCCCCATATGTATCTACTGGAGCTTGTTGAAAATTCACTTTCTGGGCCAATCTCAAATGCCATCTCTGGAGCCAGTAATCTGACAATGTTGTTAATTTCCTGGAATAACTTTTCTGGGTCGATTCCTGATTCAATTGGGTCGTTGTATAAGCTTGAGGACTTTATTGCCAGCTATAATAGTCTTTCTGGTCAGTTTCCAGCTAGAATGATTAAGCTGAGCCAGTTGGAAAGGCTTGTTCTCAATGACAATCAACTCTCTGGAGAAATTCCTCCAGGGTTTGGTGATTTGAAAAAGCTCAATGAGATTGATTTGGCAAATAATAGGATTGAGGGTTACATTCCAATTGAATTAGGGTACTTGCCTGTGCTTAATTTCCTTGATCTTTCTGGCAATCGCTTGACTGGTCAAATTCCAATGGAGCTGCAAAATTTGAAGCTTGATCACCTGAATTTGTCAAACAACCAGCTTTCCGGGAAAATCCCTTCTCTTTTTGCCAGTGAGAGTTATAGGGATAGTTTTCTAGGAAATAGAGGCCTCTGTGGTAATAATCCTGGACTATGTCCAACCTTGGGTAAGAAGAAGAAAAGGAAGAACGTGTGGGTTTTCGGTTTCATATTTGCACTTGCTGGGGGTGTGTTAATCATTGGGATAAACTGGTTTTACTCCAAGTTCCGGAATTTCAAGAAGATGAAGAAAAAGGGATGTAGCATGTCAAAGTGGAGGTCATTTCATAAGCTGGGCTTCAGTGAGTTTGAGATTGTTGAATTGATGAATGAAGATAATGTAATAGGGAGCGGATCATCAGGGAAGGTGTACAAAGTGGTGCTGAGTAATGGTGAGGTGGTGGCAGTGAAGAAATTGTGGAGAGCAACTAGGATGGAAATTGGAAATGTTGATCCTGAAAAGGATGGATTTGAAGCTGAAGTTGAGACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGCTATGGTGTTGCTGCAACAGTGGGGATGGAAAGCTGCTAGTTTATGAGTATATGCCAAATGGGAGCCTTGCTGATTTGTTGCACAGCAACATGAAAAGCTTGTTGAATTGGCCAACTAGATATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATAATGATTGTGTCCCCCCTATTGTTCACAGGGATGTAAAATCTAGCAATATCTTGATAGATGAAGAATTTGGAGCAAAAATAGCAGATTTTGGAGTTGCTAAAACTGTTAGGAGAGCCAGCCAAGATACAGAATCCATGTCTGTCATTGCCGGATCTTATGGTTATATTGCTCCAGAATATGCTTATACTCTTAGGGTGAATGAGAAGAGTGACATTTATAGCTTTGGAGTAGTCATTCTGGAGTTGGTAACTGGGAAACCCCCTCTTGATCCAGAGTATGGAGAAAAAGATCTGGTAAAATGGGTTACCTCTACATTGGATGAGGAAGGAGAGGATCAAGTGATTGATCCTACTCTTGATCCTAAATACAGGGAAGAAATCAGCAGGCTACTCAGCGTTGGGCTTCTTTGCACCAGCTCTCTTCCTATAACCCGCCCTTCAATGCGTAGAGTGGTGAAATTGCTAAGAGGAGTAACTAGAATTCCCAAATCCAGAACCGGAAAACTCTCTCCTTACTACCAAGAAGAGGCCTCTGATAATGAAAATCAGGGAAGCATTGTTTTTGAGCTAGGTGCTTAG 2997 0.4655 MDKVEQLFLFLLLLFVSPTFSLNQEGLFLLQAKHQLSHPSHSLSNWNRRDATPCSWTGVTCDRATGAVTSLHLSDSELSGPFPSAFCRLPSLSILSLSNNNLNSSLSATALSACSTLRRLDLSLNLFSGPIPNTLSHLPSLLHLNLSFNNFSGNIPATFGNFRRLESLSLVNNLLTGKIPTSLGNVSTLKELHLAYNDLGGPIPSTLGNLTDLEDLWLAKCNLVGTIPLSLGSLVRLWNLDLSQNMLTGPIPEPVFTGLTSIVQIELYENFLSGELPRGPRIANLTQLERFDASQNELTGTIPDELCGLKNLGSLNLDVNSLEGSLPESIAESENLYQLMLYNNSLSGSLPSGLGSKSQLQILDVSYNQFSGEIPASLCRGGGLQELLLGYNSFSGEIPESLGDCKSLMRIRLGNNNLSGTVPYGLWGLPHMYLLELVENSLSGPISNAISGASNLTMLLISWNNFSGSIPDSIGSLYKLEDFIASYNSLSGQFPARMIKLSQLERLVLNDNQLSGEIPPGFGDLKKLNEIDLANNRIEGYIPIELGYLPVLNFLDLSGNRLTGQIPMELQNLKLDHLNLSNNQLSGKIPSLFASESYRDSFLGNRGLCGNNPGLCPTLGKKKKRKNVWVFGFIFALAGGVLIIGINWFYSKFRNFKKMKKKGCSMSKWRSFHKLGFSEFEIVELMNEDNVIGSGSSGKVYKVVLSNGEVVAVKKLWRATRMEIGNVDPEKDGFEAEVETLGKIRHKNIVRLWCCCNSGDGKLLVYEYMPNGSLADLLHSNMKSLLNWPTRYKIAIDAAEGLSYLHNDCVPPIVHRDVKSSNILIDEEFGAKIADFGVAKTVRRASQDTESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDPEYGEKDLVKWVTSTLDEEGEDQVIDPTLDPKYREEISRLLSVGLLCTSSLPITRPSMRRVVKLLRGVTRIPKSRTGKLSPYYQEEASDNENQGSIVFELGA. 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05685 998 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Seca4g05685 998 Pfam Leucine rich repeat 68 126 IPR001611 GO:0005515
Seca4g05685 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Seca4g05685 998 SMART serkin_6 686 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05685 998 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Seca4g05685 998 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Seca4g05685 998 Gene3D Phosphorylase Kinase; domain 1 669 768 - -
Seca4g05685 998 SUPERFAMILY Protein kinase-like (PK-like) 687 961 IPR011009 -
Seca4g05685 998 Gene3D Ribonuclease Inhibitor 360 618 IPR032675 -
Seca4g05685 998 SUPERFAMILY RNI-like 360 590 - -
Seca4g05685 998 FunFam Receptor-like protein kinase HSL1 311 618 - -
Seca4g05685 998 FunFam Leucine-rich receptor-like protein kinase family protein 203 304 - -
Seca4g05685 998 Gene3D Ribonuclease Inhibitor 280 359 IPR032675 -
Seca4g05685 998 Pfam Leucine Rich repeat 187 201 IPR001611 GO:0005515
Seca4g05685 998 Pfam Protein kinase domain 688 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05685 998 Gene3D Transferase(Phosphotransferase) domain 1 769 977 - -
Seca4g05685 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 189 962 - -
Seca4g05685 998 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Seca4g05685 998 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Seca4g05685 998 FunFam Receptor-like protein kinase HSL1 670 768 - -
Seca4g05685 998 SUPERFAMILY RNI-like 70 419 - -
Seca4g05685 998 ProSiteProfiles Protein kinase domain profile. 686 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05685 998 Gene3D Ribonuclease Inhibitor 24 176 IPR032675 -
Seca4g05685 998 Pfam Leucine Rich Repeat 574 593 IPR001611 GO:0005515
Seca4g05685 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Seca4g05685 998 SMART LRR_typ_2 358 381 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 89 113 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 525 549 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 285 309 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 234 258 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 138 161 IPR003591 -
Seca4g05685 998 SMART LRR_typ_2 501 524 IPR003591 -
Seca4g05685 998 FunFam Leucine-rich repeat receptor-like protein kinase 769 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05685 Seca-Chr4 108035582 108039112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05685 19 993 Receptor kinase-like Gene Family AT1G28440 58.451 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g05685 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05685 - - gmx:100778128 1287.71