Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05683 ATGGGTGTTGACTATTACAAGGTCTTGCAGGTCGAGAGGAACGCCAAAGAGGACGACCTGAAGAAGGCTTATAGGAAGCTCGCCATGAAATGGCACCCTGACAAGAACCCTAACAACAAAAAAGAAGCCGAATCCAAATTCAAACAAATCTCAGAAGCCTACGATGTAAGTTTTCTCATAAAGGGCATTGTGCTGAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAAGGTCAGGTGCCACCTCCTGATGCTTCTGGAGACATTCCGGCGTCGTTTCGGTTCAATCCCCGGGACGCTGATGATATTTTTAAGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGGGGCATGGGGAGAGGTGGTGGTGGCGGTGGCGGAGGCATGAGATCGAGGTTCTCTAATGGGATGTTTGGTGATGACATATTTGGATCTTTTGGGGATGGAGGAGGAGGAGGAGTCCATGTGAATCAAGGTGCTCCTCGCAAGGCTCCTCCTATTGAGAACAGGTTGCCCTGCTCTCTCGAGGAGATATATAAAGGGACCACCAAGAAGATGAAGATTTCTAGAGAAATTGTTGATGCCACTGGCAAAACCATGCAGGTGGAGGAGATCTTGACGATTAATGTCAAGCCTGGTTGGAAGAAGGGGACCAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCGAATGTGACACCTGCCGACCTTGTTTTCATTATTGATGAAAAACCACACAGTGTCTTTACTCGGGATGGAAATGATTTGGTTGTTACCCAAAAGATTTCTCTAGCTGAAGCCTTAACTGGTTATACAGTGAATCTCACTACACTGGATGGTAGAAGCTTAAATATACCAATCCACAATGTTATTCATCCTGATTATGAGGAGGTCATTCCAAGAGAAGGAATGCCACTCCCAAAGGATCCAACAAAGAAGGGAAATTTGAGGATAAAGTTCACCATCAAATTCCCAACCCGGCTCACTGCTGACCAGAAGGCAGGAATAAAGAAACTCTTGGCTGCCTGA 1044 0.4636 MGVDYYKVLQVERNAKEDDLKKAYRKLAMKWHPDKNPNNKKEAESKFKQISEAYDVSFLIKGIVLSDPQKRAIYDQYGEEGLKGQVPPPDASGDIPASFRFNPRDADDIFKEFFGFSSPFGGMGRGGGGGGGGMRSRFSNGMFGDDIFGSFGDGGGGGVHVNQGAPRKAPPIENRLPCSLEEIYKGTTKKMKISREIVDATGKTMQVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHSVFTRDGNDLVVTQKISLAEALTGYTVNLTTLDGRSLNIPIHNVIHPDYEEVIPREGMPLPKDPTKKGNLRIKFTIKFPTRLTADQKAGIKKLLAA. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05683 347 Gene3D - 251 331 - -
Seca4g05683 347 FunFam Dnaj homolog subfamily b member 168 249 - -
Seca4g05683 347 SUPERFAMILY Chaperone J-domain 3 132 IPR036869 -
Seca4g05683 347 ProSiteProfiles dnaJ domain profile. 4 78 IPR001623 -
Seca4g05683 347 Gene3D DnaJ domain 3 128 IPR036869 -
Seca4g05683 347 FunFam DnaJ subfamily B member 13 3 124 - -
Seca4g05683 347 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Seca4g05683 347 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 345 - -
Seca4g05683 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Seca4g05683 347 SMART dnaj_3 3 70 IPR001623 -
Seca4g05683 347 FunFam DnaJ subfamily B member 13 251 331 - -
Seca4g05683 347 Gene3D - 171 249 - -
Seca4g05683 347 CDD DnaJ 4 56 IPR001623 -
Seca4g05683 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 251 IPR008971 GO:0006457|GO:0051082
Seca4g05683 347 Coils Coil 6 26 - -
Seca4g05683 347 CDD DnaJ_C 170 333 - -
Seca4g05683 347 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca4g05683 347 PRINTS DnaJ domain signature 70 89 IPR001623 -
Seca4g05683 347 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca4g05683 347 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca4g05683 347 Pfam DnaJ domain 4 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05683 Seca-Chr4 107940151 107943279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05683 5 77 C2H2 Transcription Factor Family AT1G74250 33.766 4.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05683 K09510 - gmx:100778672 525.783