Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05674 ATGCTCGCGGTGTCACCTTTGAGGAGCACGAAAGATGAAGGCCAAGGAGAGATGGAGAACTTCTCGATCGGAACTGATGACTTTGCTGACCTTTCCGATGGGAACTTGTTGGAAAGCATCAACTTCGATGATCTATTTGTTGGAATCGACGACTGTGATGTCTTGCCGGATCTGGAAATGGACCCTGAAATGCTTGCTGAGTTCTCAGTCAGCGGTGGTGAGGAATCGGAGATGAACTCATCAGCTTCATTTGCAAATAGAAAATCCGAGGATGGGAATATTGTTACTGCTACGCATAAACAAGATGAAGATAAAGGTGCTTCTTCAGATTCGGGAACTAATTCTGGGTCAAGTCGTGGGGAGGAGATAGTGAGCAAAAGAGACGAATCTGTTGTGGTTAATCCATCGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAAAATCATCGGATAAAGAGAAAGGTGAAAGTGGATTGGACCCCAGAATTGCACAGACGATTTGTGCAAGCAGTAGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCACGGATTCTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCACATAGGAAGCATTTGTTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCAACGGAGGCAATTGTTTGGTCGAGGAGGAGGAGGGAAGAGAGACATTAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCCTTACATGTATGGGGGCATCAAACTATGGACCGGTCGTTTATGCACATGTGGCCTAAGCATCTACCTTATTCGCCTTCGCCACCAGCATGGCCACTGCGGACAGCTCCACCTCCAGATCCTTCATATTGGCACCACCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCAACAACTGTTCCGGGCATTCCACCACCTCACGCCATATACCAAGTAGATCCAGGCATTGGTCTCACCGCCGGCCAAACAGCTCCTCCACCCCTCTTTGATTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTTTTATCAAAGCCATGGTTGCCACTTCCTCTTGGCCTTAAAGCTCCAGCGCTTGATGGTGTGATGGGTGAATTACAGAGACAAGGAGTTCCAAAAGTTCCACCCTCTTGTGCTTGA 1260 0.4833 MLAVSPLRSTKDEGQGEMENFSIGTDDFADLSDGNLLESINFDDLFVGIDDCDVLPDLEMDPEMLAEFSVSGGEESEMNSSASFANRKSEDGNIVTATHKQDEDKGASSDSGTNSGSSRGEEIVSKRDESVVVNPSPKEGEKGRKSSSQSKNHRIKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGRGGGGKRDINPWLAPTMGFPPMTPMHHFRPLHVWGHQTMDRSFMHMWPKHLPYSPSPPAWPLRTAPPPDPSYWHHQRAPNAPTPGTPCFPQPLTTTRFGSTTVPGIPPPHAIYQVDPGIGLTAGQTAPPPLFDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGVPKVPPSCA. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05674 419 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 418 IPR044825 GO:0003700|GO:0045893
Seca4g05674 419 MobiDBLite consensus disorder prediction 121 148 - -
Seca4g05674 419 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g05674 419 Gene3D - 155 216 - -
Seca4g05674 419 Pfam Myb-like DNA-binding domain 161 210 IPR001005 -
Seca4g05674 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 214 IPR017930 -
Seca4g05674 419 MobiDBLite consensus disorder prediction 93 107 - -
Seca4g05674 419 MobiDBLite consensus disorder prediction 73 92 - -
Seca4g05674 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 158 212 IPR006447 GO:0003677
Seca4g05674 419 MobiDBLite consensus disorder prediction 69 157 - -
Seca4g05674 419 FunFam Two-component response regulator 154 217 - -
Seca4g05674 419 SUPERFAMILY Homeodomain-like 156 215 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05674 Seca-Chr4 107509679 107513671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05674 29 325 G2-like Transcription Factor Family AT5G44190 47.452 5.05e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g05674 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05674 - - gmx:100790591 639.802