Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05669 ATGGCTTCGTTATTCAAGGTACACTATACTGAGGATTACGTAATCTGGTTCAAGAACTGTGCGTTTTATTTGATTTTTTTGATTTTATTTTTGAAGGATCCAACGAAGCTTTCGGCGTATCGAGATAGAAGATTCCCTGGAACGCAAGAGGACTTTGAGCAGGCGCTGCAGACTTCAACCACCGTTTATGTGGGGAACATGTCGTTTTACACAACAGAGGAGCAAGTTTATGAACTTTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACACTAAAACTCCCTGCGGATTTTGTTTCATTTTATATTACTCACGCGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACAATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGATGGCAGACAATGGGGTCGCGGGCGTAGTGGTGGCCAGGTGAATAACCCTTGTACAAGGAACTACAAATACTTCACAATAGTAGTTGTGTCCTTGTCATACCTTAACCATGTTGGACACTTCATGAACACTTCAAATATTTTATGA 567 0.4162 MASLFKVHYTEDYVIWFKNCAFYLIFLILFLKDPTKLSAYRDRRFPGTQEDFEQALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFILYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVNNPCTRNYKYFTIVVVSLSYLNHVGHFMNTSNIL. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05669 188 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 31 162 IPR027157 GO:0000339|GO:0005846|GO:0045292
Seca4g05669 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 132 IPR000504 GO:0003723
Seca4g05669 188 SUPERFAMILY RNA-binding domain, RBD 48 160 IPR035979 GO:0003676
Seca4g05669 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Seca4g05669 188 Gene3D - 30 165 IPR012677 -
Seca4g05669 188 SMART rrm1_1 61 134 IPR000504 GO:0003723
Seca4g05669 188 CDD RRM_NCBP2 62 139 IPR034148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05669 Seca-Chr4 107280884 107281734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05669 57 133 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 1.19e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05669 K12883 - gmx:100789535 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05669 4 107280884 107281734 Seca4g05669 4 107280884 107281734 ECH