Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05664 ATGAAGCGTTATGTTCACATCAATGATGATGAATCATCCCATGATTTCTACTGTGATAATCGTATATCAAACAGAAAATATACTGTATTGAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTACAATTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTTATTTTTGCAGTCTCTGCATCCAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTATGGGTTGTCAGGAAGGGCGTCAAGAAACTTATCCAAGCCCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGACGAAGTGCCTTGTGACCTTGTATTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACTTCTGCGCTTGATGGTGAAACTGATCTGAAGACACGGGCCATACCTTCTGCTTACATGGGAATTGACGTTGAACTATTGCACAAAATTAAGGGTGTTATTGAGTGTCCCAGTCCAGATAAAGACATCAGAAGATTTGATGCAAACATGAGGTTGTACCCCCCGTTTATTGACAATGATATTTGCCCTTTAACCATTAAAAACACTATTCTGCAGTCATGTTACTTGAGAAACACTGAATGGGCATGTGGAGTGGCTGTGTATACAGGCAACGAAACCAAACTGGGCATGAGTAGAGGTATCCCCGAACCAAAGCTCACTGCTATGGATGCCATGATTGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTGGTTGTTATGGTTCTTGGCATAGCGGGTAATGTTTGGAAGGATACAGAAGCAAAGAAACTATGGTATGTTCTTTACCCTCATGAAGGCCCTTGGTATGAACTATTGGTAATCCCTTTGCGGTTCGAGCTTCTTTGTTCCATCATGATACCCATATCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTGTACGCAAAGTTTATTGACTGGGACCATCAGATGATTGACCTAGAGACTAGTACTCCATCCCATGCAACAAATACAGCGATAAGTGAGGACTTGGGACAAGTTGAGTACATTTTGACTGACAAAACTGGCACCCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCATTTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTCAATGCTGTTTCCAGTGGTTCTTCTGATGTTGTAAGATTTCTTACAGTTATGGCTATATGTAATACTGTTGTACCTACACGAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAAGATGCTCTCGTTCATGCTGCTGCTCGGCTGCATATGGTTTTATTCAATAAGAGTGGAAACATTCTCGAAGTCAACTTCAACTCTTCAATACTTCAGTATGAAGTCCTGGAAATCTTAGAGTTCACCTCTGATCGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAATGGAAAGATTCTTCTCCTGTCAAAAGGAGCAGATGAAGCTATTCTTCCATATGCCCGGGCTGGGCAGCAAACTCGGCATTTTATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACGCTCTGTTTGGCTTGGCGTGAGTTAAAGAAAGATGAATATCGAGAATGGTCATTGATGTTTAAAGAGGCGAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTTCCTGAAACAATAGAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGATAAGCAGGATACTGCAATACAAATTGCCTTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGACAGCTTCTATTAATTGATGGAAAAACAGAGGATGGAGTTTGTAGAAGTTTAGAGAGAGTGCTTCAAACAATGCGGATAACAACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCTCTTGAGATTGCACTTAACCACTACCGTAAAGCTTTCACTGAGCTGGCAGTATTGTCAAGGACTGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAAATCCTAAAATCATGTGACTATAGAACACTGGCGATTGGCGATGGTGGGAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGCATCAGTGGCAGAGAAGGAATGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAGTAAGCCGTTTTATATCTTTCTTAGGTGCAATCATGTGTATACTAGTTCATCAACACAGTTTTCCAAGTAA 2430 0.4074 MKRYVHINDDESSHDFYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVRKGVKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETSALDGETDLKTRAIPSAYMGIDVELLHKIKGVIECPSPDKDIRRFDANMRLYPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVMVLGIAGNVWKDTEAKKLWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDLETSTPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDVELLNAVSSGSSDVVRFLTVMAICNTVVPTRSKTGDILYKAQSQDEDALVHAAARLHMVLFNKSGNILEVNFNSSILQYEVLEILEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIEAVEQYAHLGLRTLCLAWRELKKDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQDTAIQIALSCNFISPEPKGQLLLIDGKTEDGVCRSLERVLQTMRITTSEPKDVAFVVDGWALEIALNHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGMQAARAADYSIGSKPFYIFLRCNHVYTSSSTQFSK. 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05664 809 SFLD Haloacid Dehalogenase 362 792 - -
Seca4g05664 809 NCBIfam HAD-IC family P-type ATPase 717 787 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g05664 809 Pfam Cation transport ATPase (P-type) 436 532 - -
Seca4g05664 809 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Seca4g05664 809 Gene3D - 602 790 IPR023214 -
Seca4g05664 809 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Seca4g05664 809 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Seca4g05664 809 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Seca4g05664 809 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Seca4g05664 809 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 787 - -
Seca4g05664 809 FunFam Phospholipid-transporting ATPase 75 251 - -
Seca4g05664 809 Gene3D - 75 251 - -
Seca4g05664 809 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 350 IPR023298 -
Seca4g05664 809 Gene3D - 444 592 IPR023299 GO:0000166
Seca4g05664 809 Pfam E1-E2 ATPase 99 292 - -
Seca4g05664 809 FunFam Phospholipid-transporting ATPase 602 788 - -
Seca4g05664 809 SFLD p-type atpase 362 792 IPR044492 -
Seca4g05664 809 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Seca4g05664 809 FunFam Phospholipid-transporting ATPase 449 592 - -
Seca4g05664 809 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Seca4g05664 809 SUPERFAMILY HAD-like 368 787 IPR036412 -
Seca4g05664 809 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05664 Seca-Chr4 107158824 107169482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05664 1 807 Primary Pumps ATPases AT5G44240 84.282 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05664 K01530 - gmx:100786505 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05664 4 107158824 107169482 Seca4g05664 4 107158824 107169482 ECH