Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05662 ATGAGCAGTGTCTGTGCTGAGCAGCACAAGTTTCACTCTTCCCACCAACTCCTCTCCCCAAAGAAATCCCTCAGAGAAATCGACATCCCACCAAGGAAGCTTCTCAGTCGCCGCGCCGCCGCACACGAAGTTACCGCCGAAATGTTCTCCGACGAGGCAATCCTTCAGAAATTTCTCCCTTATAACAACCCTGCCAATTCGGACTCTGATTCCGATGACCCATACTCCTCTGACCATTTCCGCATGTATGAATTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGCCATGACTGGACTGACTGTCCCTTCGCACACCCCGGCGAGAAAGCTCGCCGCCGTGATCCACGGCGGTATCATTACTCAGGCACGGTGTGTCCTGAGTATCGCCGTGGAGGGTGCAGCCGTGGTGACAGCTGTGAATTCGCACATGGCGTGTTTGAATGCTGGCTTCACCCTGCTAGGTACAGAACTGAAGCTTGCAAAGATGGGAAAAATTGCAAGCGAAAGGTGTGTTTCTTTGCACACACACCTCGCCAGCTTAGAATTTTGCCAGTGAGTTCCCAAAATTCTTCAAATGAAATGACATGCAATAAGAAAACTAATAAGCTTTTAAGCCCTGTTTCTAGATCAAACAACTGTTGTTTGTTTTGCCATAACTGTGGCGGTGGTGGTGGTGGAGGAGGAAATTCCAATGCTTCACCAACTTCCACGCTTTTCGGCATGTCGCATTTCTCGCCACCGATGTCGCCGTCGTCATCTCAAACCTCGCCGCCTCTGTCTCCTCTGAACCCGCGAAATGCGGTTTCTTCACTTTCTCGCTATGGTGCCATGAATAATCATAATCATCATGGGGTTGTGAGCTATAAGGATGTTCTTACTGAGTTAATGAGTTCTTTTGAGGGGTTGAGTTTCGGTGATGGTTCGCCTGTTTCTGGTGCAAAAAGCACTTTTAGCACCAGAAATCTGCCATGGCTTGATGTTCCTCTGAACTGTGAGGAACAACAACAGTTCATTGTTTCGCCTTCTGCTTCTTCTTTCAGCTGTGATGAACAACAGCAACAGTTTATTCTTTCACCTTCGACTACTACTCAGACACCACCCACAAGTTTCAAGGGGAAATATTCAATTGGAAGCACCAAATTCTTCGGTAACGACAATAAATTTGTCAGCGCTGATGCTAATGGGACTTCTTGCCCTGCCCCTGATCTCGGGTGGGTGAATGAGCTGCTGATGTGA 1236 0.4887 MSSVCAEQHKFHSSHQLLSPKKSLREIDIPPRKLLSRRAAAHEVTAEMFSDEAILQKFLPYNNPANSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVSSQNSSNEMTCNKKTNKLLSPVSRSNNCCLFCHNCGGGGGGGGNSNASPTSTLFGMSHFSPPMSPSSSQTSPPLSPLNPRNAVSSLSRYGAMNNHNHHGVVSYKDVLTELMSSFEGLSFGDGSPVSGAKSTFSTRNLPWLDVPLNCEEQQQFIVSPSASSFSCDEQQQQFILSPSTTTQTPPTSFKGKYSIGSTKFFGNDNKFVSADANGTSCPAPDLGWVNELLM. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05662 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 144 IPR000571 GO:0046872
Seca4g05662 411 MobiDBLite consensus disorder prediction 237 264 - -
Seca4g05662 411 FunFam Zinc finger CCCH domain-containing protein 66 77 145 - -
Seca4g05662 411 SMART c3hfinal6 119 145 IPR000571 GO:0046872
Seca4g05662 411 SMART c3hfinal6 154 177 IPR000571 GO:0046872
Seca4g05662 411 ProSiteProfiles Zinc finger C3H1-type profile. 120 146 IPR000571 GO:0046872
Seca4g05662 411 Gene3D - 119 183 - -
Seca4g05662 411 SUPERFAMILY CCCH zinc finger 118 148 IPR036855 GO:0046872
Seca4g05662 411 PANTHER UNKEMPT FAMILY MEMBER 45 410 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05662 Seca-Chr4 107128030 107129265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05662 72 181 C2H2 Transcription Factor Family AT5G07500 70.000 3.25e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g05662 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05662 K23047 - gmx:100801371 516.924