Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05658 ATGGAGGATGGGGACACTTCGCAGCACCTCTTCCACCCGCGACATGCCAAGCAACCACCGCACTTCAAAGCCCACGACGACCAACCACAACAACAAGAGCAGCAGCAGCAGGAACTAGAGGAGGATGATGATGACGAACAGCAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGCCAGGAGAAGAAGAGGAAGAAGAAAAAGAAGATGATGATGAAGAAGAAGGGCATCGCCATAATCACGACAAGGATAAATCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCTGAATTCGTGTTTGTAGAACTTCTGGATATACGGAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGGTTTTGTAGGGAATGCATTGACAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGCTCTTTGAGAGATGATCCAAACTATGATGCCCTTATAGCTGCTTTATATCCAGATATAGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAAGTGCATTTGTGACAAGATCACAGCGTAATCAACGGAACATTCATTCTAGGAGACAAAACCAAGTGATTGATATTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCATCTTCCGGTGATGAGCGGTGTACAGAACTCCGGCAGAGAAGGCGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCGTCATCAATGGCAAGTCCTGATGGTGGATACATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGTATTTCAAGCCAGGTGTCAAAACCTAGAAAGCTTACATGGGGAAGGGGTGGTTTTAGGAGTAACACACGACATGGAAGTGGTGGTGGTAGCAATAGCAAAAGTTCCCGCAACAATCGATTGTCCAAGTTGGTTGATCATCTTAAAAGCTTGGATGAAAACATTGATGAGTTAAATGTCCATCTAATGCTTGTTTCTATGGACAAAGAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAACCTTGACTGTGAACCACCTTTATGAAGTGAGATCCCCTTTGTCTTTTGATCAGTTGTTTCTGGTAGTGATAGTTTTTGATCAACTTGATTTAAATTTGTTTATGCCTCCACTAGAAGGCCTAGTATAA 1344 0.439 MEDGDTSQHLFHPRHAKQPPHFKAHDDQPQQQEQQQQELEEDDDDEQQEEEEEEEEEEEEEEPGEEEEEEKEDDDEEEGHRHNHDKDKSQDSDETPSSGSEEKPEFVFVELLDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPSAFVTRSQRNQRNIHSRRQNQVIDIQGSEDNEEENDNNEKDSSSGDERCTELRQRRRKRWTRVRPSQPSSSMASPDGGYIESDMDISRENRGISSQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKSSRNNRLSKLVDHLKSLDENIDELNVHLMLVSMDKESTPSLQQPHLCCRPTLTVNHLYEVRSPLSFDQLFLVVIVFDQLDLNLFMPPLEGLV. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05658 447 MobiDBLite consensus disorder prediction 233 256 - -
Seca4g05658 447 SMART ring_2 120 159 IPR001841 -
Seca4g05658 447 ProSiteProfiles Zinc finger RING-type profile. 120 160 IPR001841 -
Seca4g05658 447 PANTHER OS11G0578200 PROTEIN 31 414 IPR044592 -
Seca4g05658 447 CDD RING-HC_RING1-like 117 182 - -
Seca4g05658 447 MobiDBLite consensus disorder prediction 1 103 - -
Seca4g05658 447 SUPERFAMILY RING/U-box 106 174 - -
Seca4g05658 447 Coils Coil 362 382 - -
Seca4g05658 447 MobiDBLite consensus disorder prediction 220 359 - -
Seca4g05658 447 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Seca4g05658 447 MobiDBLite consensus disorder prediction 36 75 - -
Seca4g05658 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 183 IPR013083 -
Seca4g05658 447 MobiDBLite consensus disorder prediction 345 359 - -
Seca4g05658 447 Coils Coil 186 217 - -
Seca4g05658 447 MobiDBLite consensus disorder prediction 76 103 - -
Seca4g05658 447 Coils Coil 32 68 - -
Seca4g05658 447 Pfam Zinc finger, C3HC4 type (RING finger) 119 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05658 Seca-Chr4 107093221 107104823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05658 113 183 C3H Transcription Factor Family AT3G23060 33.784 7.61e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05658 K10695 - gmx:100776547 535.413