LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05657	ATGGACGGGATGGAGCCAAAGGTGATGATGAGAAGTGACAACAAGGTGAAGAAGGAGGGTATTGGCAACCAAAATGGGCACTCGGAGGAGGATAAGAAGAAGAAAGGGGTGGTGGTAGCTTTTGCTGGGAAGAAAGGTTCTAGTGGTGGCATGCGGTGTTGTCAAGCGGAGAAGTGCAACGCTGATCTTCATGATGCCAAGCAGTATCATAGAAGGCACAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTGGTTCTTGTGGCTGGAACAAGACAACGGTTTTGTCAGCAATGTAGCAGGTTTGGGGAGAGATTCCATGAGTTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGAAGGCGTTTGGCTGGACACAATGAACGGCGAAGAAAGAACTCTGAGTCTCAAGCAGAAGGATCAAACCGCAAAGGGACAGGGCTTCAGTTGAAGGACATTACTTGTGGGCAAGCTGATGATAGGGGGAGAATTCAGATAACAATTCAAGAAAATGGAGCTAATTACAAACATTTTCAGATAAGATGA	543	0.4641	MDGMEPKVMMRSDNKVKKEGIGNQNGHSEEDKKKKGVVVAFAGKKGSSGGMRCCQAEKCNADLHDAKQYHRRHKVCEYHAKAQVVLVAGTRQRFCQQCSRFGERFHELAEFDDTKRSCRRRLAGHNERRRKNSESQAEGSNRKGTGLQLKDITCGQADDRGRIQITIQENGANYKHFQIR.	181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05657	180	SUPERFAMILY	SBT domain	52	135	IPR036893	GO:0003677\|GO:0005634
	Seca4g05657	180	Gene3D	-	49	119	IPR036893	GO:0003677\|GO:0005634
	Seca4g05657	180	ProSiteProfiles	Zinc finger SBP-type profile.	51	132	IPR004333	GO:0003677
	Seca4g05657	180	Pfam	SBP domain	54	131	IPR004333	GO:0003677
	Seca4g05657	180	MobiDBLite	consensus disorder prediction	1	34	-	-
	Seca4g05657	180	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	42	136	IPR044817	GO:0003677
	Seca4g05657	180	MobiDBLite	consensus disorder prediction	122	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05657	Seca-Chr4	107045337	107047380	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05657	33	180	SBP-box Gene Family	AT3G15270	51.007	2.49e-41	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Seca4g05657		SBP	4.7e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05657	-		-	ccaj:109810441	236.498