Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05654 ATGGCTTTCTGTACACAGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCACGAGATAAGATGTGGAGGGGAAAACACTCTCTGATGCGTGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGGTTTCACACTTGCTATCATCAAAAAACGAAGGCGAGCATGATCATTTTCATCTAGAAGGATTAATGGAGAGTCCCTCAGCTGATGACGATGGGGACTGCTTTTCACCATTACTGTTAAATGCAACTTCCGTTAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATCCGTCAAATGGAGCATAGCAGCACTCAATCCGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACACCTGACTGCCGGAATACTAGTCGAATCCTTATTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGAGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTATTGGGAGGCATTCTTCTCATGTATGAGTTCCATAATTATTTGAAACCAATTCTTCTTCTGATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTATGCGTGATTCACGGAAACCATTGCATCCTCACTATATATTAGGGTTATCAGTTACTCGGCTAGCAATACCATTATATATTTTTGGTTGCCCTAGCAACTTCATGCGTATAGAGTCAGACAAGAGCTGGTGTGTTTGGTTGGCTGTATTTATTGGGATTCAAGCTGCAATTCTTCTACTTCAGCACTATCTTGGATCGCGCTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGATACAAGACATTCTATAGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCAGTTTACCACCTGCATAG 1191 0.4106 MAFCTQLGVFSSQVLQDSSRDKMWRGKHSLMRDMEKHCNIEIAAQVSHLLSSKNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLKPILLLMYSFWIPQIITNVMRDSRKPLHPHYILGLSVTRLAIPLYIFGCPSNFMRIESDKSWCVWLAVFIGIQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHSIDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05654 396 SMART ring_2 346 389 IPR001841 -
Seca4g05654 396 ProSiteProfiles Zinc finger RING-type profile. 346 390 IPR001841 -
Seca4g05654 396 CDD RING-H2_TUL1-like 340 395 - -
Seca4g05654 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 396 IPR013083 -
Seca4g05654 396 FunFam E3 ubiquitin-protein ligase, putative 332 396 - -
Seca4g05654 396 Pfam Ring finger domain 345 390 IPR001841 -
Seca4g05654 396 PANTHER RING ZINC FINGER PROTEIN 11 395 - -
Seca4g05654 396 SMART ringv_2 345 390 IPR011016 GO:0008270
Seca4g05654 396 SUPERFAMILY RING/U-box 326 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05654 Seca-Chr4 106919756 106925817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05654 346 393 C3H Transcription Factor Family AT4G12190 37.500 1.83e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05654 K23788 - gmx:100780140 736.487