Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05643 ATGGAGCATGATAAAAATCAATCACTTGAATTTGATGAGCCTAAAGACATTTTTCTTGGTCAAGTTGTGCATAGCCAAGATGAAGCTTATAACTTATACCAAGCACATGCCTTCAAAATGGGGTTTAGTGTAAGAAAGGGGAAGGAGTTGTATTATGATAGTGAGAAAAAGTTCATACGCTCCAAATATTATTTTTGTTCCAAAGAAGGGTTTAAAAATAATGAAGCTGAAGGTGAAGTGGCTTATGAAAGAGCAAATTCAAGAACGGGTTGTAAAGCAATGGTGCGATTTAATGTGAGTAAGGAAGGAGTTTGGAAAATTACACAGTTGGTACTCAATCACAATCACAAGTTTGTGCCACCAGAGCAAAGACACTTGTTACGTTCTATGAGAAATGTATCTACTGTCAAAGGGGGCGTGATAAAGTCCATGGTGAATGCTGGTATAAAAGTTACAAAGATTTGGAGTTATTTAGGAGAGGAAGTTGGTGGTTTCGATAAACTTGGTTTAACGGTGAAAGATATGCAAAATTATGTCTACACTGAAAAGTTGAAATTGATTGAAGCCGAGGATGCTCAATCATTAGTGAATCTCTTGCGGAGTAGACAAGCACAAGATCCAATGTTCTACTACAGTGTACAATTAGACCAAGAGTCACGCCTCACAAATGTGTTCTGGAGAGATGGCAAATCGAAAGTTGATTATGATTGCTTTGGGGATGTTGTGGTTTTTGATACCACTTATCGTACTAATAAATACAACTTGATTTGTGCCCCTTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCTCTGTTGTTTGATGAAACTGCAGTTTCTTTTAATTGGTTGTTTAAAGTGTTTTTGGAGAGTATGGGAAACCAACATCCAAAAACAATTTTTACAGATCAAGATGCAGCCATGGCCAAAGCAATCGGACAGGTAATGCCAAATACATGTCATCGGTTATGCTTATGGCATATAGCAAAAAATGCTCCTTCTTATTTTGGTGCTCTCAATTCTGACTCTAAGTTTCAAAGCCTATTCCAAAGATGCATGACAAGTTGCAATTCAGAAGAAGAGTTTGAAAGCACTTGGCAAAAGATGATGAATGAGTACAAGCTTCATGATCATGTTTGGTTGAGCAATATGTACAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAGGATGTATTTTCTGCTGATATCAAGTCCTCTCAAAGGAGTGAAAGTACAAATAGTGCATTGGGTGAAATTGTAGGTAAAATAAATAGTCTCGCACAATTCTTATTGTCATTTGAGAAGATGGTAAAAAAGTGGCGGCAACTAGAAGTTGAGAAGGAATTCAAAAATAGCCAAAGTGAGCCTCCTCGCATTATTAATATTAGTGAGACTTTACGACATGCATCTACAATTTATACTCATAAGATTTTCAAACTTTTTTTGAAAGAGTATCTTGAGGGAACAGGGGGAAGCACTTCCATAGAGATTGATGGGTATGATAATGTGTCAAATCATGAAGTCATTTTAAATCACATGCCTCAAAAGAAGCATATTGTGTCATTTGACTCTTCCACTACCATGATCAATTGTAGCTGTCACAAGTTTGATTCCATGGGCATTCTTTGTAGTCATGCTTTGCGAATTTACAACATCAAAGGTGTTTTGAGAATACCCAACCAATACTTTTTGAAAAGATGGTCAAAGAATGCAAGGTCCAAGATTTATGAACACATGAATGGGGCCTTGAAAGAAGTCTCTACCTCTAACTTGAATTCAATGACCAATGATGATAATGCTAGTCTTCTTTATCGTAATGCTATTATTAAGTCATTCTATAATCTAGTTTTGGAAACTCAAGAACACAAAGAAGCTCAAAAAATTATGTGGAATTTACTTGAGATTGGAGTTGAGCGTGTGTAA 1938 0.3638 MEHDKNQSLEFDEPKDIFLGQVVHSQDEAYNLYQAHAFKMGFSVRKGKELYYDSEKKFIRSKYYFCSKEGFKNNEAEGEVAYERANSRTGCKAMVRFNVSKEGVWKITQLVLNHNHKFVPPEQRHLLRSMRNVSTVKGGVIKSMVNAGIKVTKIWSYLGEEVGGFDKLGLTVKDMQNYVYTEKLKLIEAEDAQSLVNLLRSRQAQDPMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVVFDTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLFDETAVSFNWLFKVFLESMGNQHPKTIFTDQDAAMAKAIGQVMPNTCHRLCLWHIAKNAPSYFGALNSDSKFQSLFQRCMTSCNSEEEFESTWQKMMNEYKLHDHVWLSNMYKIRHKWSTAFSKDVFSADIKSSQRSESTNSALGEIVGKINSLAQFLLSFEKMVKKWRQLEVEKEFKNSQSEPPRIINISETLRHASTIYTHKIFKLFLKEYLEGTGGSTSIEIDGYDNVSNHEVILNHMPQKKHIVSFDSSTTMINCSCHKFDSMGILCSHALRIYNIKGVLRIPNQYFLKRWSKNARSKIYEHMNGALKEVSTSNLNSMTNDDNASLLYRNAIIKSFYNLVLETQEHKEAQKIMWNLLEIGVERV. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05643 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 642 IPR031052 GO:0006355
Seca4g05643 645 Pfam SWIM zinc finger 530 554 IPR007527 GO:0008270
Seca4g05643 645 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca4g05643 645 Pfam MULE transposase domain 241 335 IPR018289 -
Seca4g05643 645 SMART 26again6 534 561 IPR006564 GO:0008270
Seca4g05643 645 ProSiteProfiles Zinc finger SWIM-type profile. 521 559 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05643 Seca-Chr4 106703181 106705118 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g05643 MULE 1.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05643 - - tpra:123905334 1005.74