Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05638 ATGGATCATCCTCAACAGGGAAGTCAACCTTCTCCTTCAACCAAAGTTGAAAGAAGGATCGTAGAGAAAAACAGGAGAAACCAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTCATCCCTACCTATAATCCCAAGGAAGCGTTACCACTGCCAGATCAAATTGACGAGGCGATAAACTACATCAAGAACTTAGAATCAAGGGTCAAGGTGGCGCAGGGGAAGAAAGAAAGCTTAATTGGAAGGAAGAGATCTCGTAGTGGCTGTAGCACTTCTGGATCAAAAGGAAGCTTAAAACCGCCAAAAATCGAGATCCATGAAATCGGTTCTTCGCTACAAGTCATTATAATGTGTGGAGTTGATGACAAGTTCATTTTCAGTGAAATTATTCGAATACTTCATGAAGAGAACTTGGAAGTCATCAATGCCAATTCTTCTCTCGCTGGAGATTCCATTCTTCATACTGTGCACGCAGAGATTCGGCAATCTTCCAGCAATACTCAATTCGGAGCGACCAAAGTAAGTGAGAGATTGAAGAAGTTTGTGAACGGATCTGTTAGTGATTTGGAAATAGAACCTGATTTATGGGATTCTGAAATTGGTACTGTGCCTTGGGGGATTATAGATAATATACAGTAA 639 0.41 MDHPQQGSQPSPSTKVERRIVEKNRRNQMKSLYSKLNSLIPTYNPKEALPLPDQIDEAINYIKNLESRVKVAQGKKESLIGRKRSRSGCSTSGSKGSLKPPKIEIHEIGSSLQVIIMCGVDDKFIFSEIIRILHEENLEVINANSSLAGDSILHTVHAEIRQSSSNTQFGATKVSERLKKFVNGSVSDLEIEPDLWDSEIGTVPWGIIDNIQ. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05638 212 SMART finulus 19 71 IPR011598 GO:0046983
Seca4g05638 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 82 IPR036638 GO:0046983
Seca4g05638 212 MobiDBLite consensus disorder prediction 76 100 - -
Seca4g05638 212 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g05638 212 Gene3D - 8 89 IPR036638 GO:0046983
Seca4g05638 212 FunFam Transcription factor bHLH162 6 91 - -
Seca4g05638 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 182 - -
Seca4g05638 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Seca4g05638 212 Coils Coil 55 82 - -
Seca4g05638 212 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g05638 212 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05638 Seca-Chr4 106561738 106562635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05638 13 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.659 1.58e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g05638 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05638 - - mtr:25487667 275.404