LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05631	ATGTCTCCTCGTACCTTTTGCTTCCTCTTAATCCTTGACACAACTCTTGTATTTCTAAGTTCAGTGTCAGCAATTGAATTTGTCTATAATAGAAACTTCAACTCTACCAACATAAAGCTCTATGGGAATGCCACCATTCAAAAATCGATTCTTACTCTTACTAACCAGACTTTCTTCTCTATAGGTCGTGCCTTTTACCCTCACAGCATACCTATGAAACCACCCAACTCTTCCACCCCTCTTCCTTTTGCAACCTCTTTTATCTTCTCCATTGCTCCTTGTAAGAACTTCCCTGTTGCTCATGGCTTTGCTTTCATTCTCTCACCTGTGATGGCCATAAATGGAGCACTCTCTGGGAATTATTTGGGACTTTTTAACCGCTCCACTTCAGGTAATTCTTCCAACCATGTCTTTGCTGTTGAGTTTGATGATTTTAGAAACGAAGAGTTCAATGAAGAGAATGATAATCATGTGGGTGTTGACTTGAATTCAATGATTTCTTTGTATTCTGAACCTGCTGGGTATTGGGGTGGTGGGAAAGATGGTAAGGAATTCGAGAAGTTGAAACTGGCTAGTGGTTTAAACTATCAAGTTTGGATAGAGTTTGAGAATTCACAACTTAATGTTACTATGGCCCCAGCAGGGAAAAAGAAGCCTCAAAGGCCTTTGATTAGTAAGCCTATTAACCTTTCTGGGGTTTTGTTGGATGAAATGTATGTGGGGTTTTCTGGATCAACAGGGAGAATGGTGGATATTTGTAGAATTCTGGCTTGGAGTTTTAGCCATTCAAATTTTTCAATTGGTGATACTTTGAGTACCAAACATTTGCCCTTGTATGTGCATCCAAAGAAATTGATTTATAGATCAACCGGTTTCATTATAGGTGTCATTTTAGGTGCACTGTTTGTCATTGGTTGCTGCACTTTGGTGTTCTTCAGTTTGTCCAGAACCAGAAGGGAAGAGCAAGAGGAAAAAATTGAGGATTGGGAATTGGAGTATTGGCCACATAGGATCAGCTACCAGGAGATTTGTGATGCAACAAGCGGATTCTCTGAAGAGAAAGTGATTGGTATTGGAACAAGTGGGAAAGTATACAAAGGAGTTTTGAAAGGAGTAGAAGTAGAAGTTGCAGTTAAGAGAATCCCTCAAGAAAGAGAAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTAGGGCTAAGAGGTTGGTGCAAAAAAGAAAAGGGAAACTTGATTCTAGTTTATGACTTCATGAGTAATGGAAGTTTAGACAAAAGGATCTTTGAGTGTGAAGAGGGAAAGATGCTAACTTGGGAAGAAAGGATTGAGGTTTTAAAAAATGTAGCTGCAGGGATTCTATACCTGCATGAGGGTTGGGATGTTAAGGTATTGCATAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGGTTAGGGGATTTTGGATTGGCTCGTATGCATGATCATCAAGGACAAGTGGCCAGCACAACAAGAGTAATAGGGACTGTAGGATACATTGCTCCTGAAGTACTTCGAACAGGAACAGCATCAACTATGTCTGATGTGTTTGGTTTTGGAATTTTAGTGCTGGAAGTAATTTGTGGTCGAAGACCAATTGAAGAACATAAGGCAGGGCTAATTGAATGGGTGATGTCCCTAATGGTGCATGGCCAATTGCACAATGCTGTTGATAAAAGGTTGAAAGCTAAAGGGAGATACACCATTGAGGAAGCTGAGAGATTGGTACATTTGGGTTTAATGTGTTCAAATTCAGACCCTAGTATTAGACCAACGATGAGACAGGTTGTGAAAATGCTGGAGGGAGAAATGGACAACATTGAGTCTGATGAAGAAAGTATAGAGATGAGTTTGCTTGGAAAAATAAAATCAGCTGCAATGTGGTCCAAAACTGAATGTACATTTCCATACAGAGGTCACCCTACTTTTGAAGAAATTAGGATGTTCAGTTATAATTCTAAGGCATCTACAAGTGGCTCAGGTACCATTCCAGAATCAGATTCAGATATCATCCGAGAAGGCAGGTAA	2091	0.4003	MSPRTFCFLLILDTTLVFLSSVSAIEFVYNRNFNSTNIKLYGNATIQKSILTLTNQTFFSIGRAFYPHSIPMKPPNSSTPLPFATSFIFSIAPCKNFPVAHGFAFILSPVMAINGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSMISLYSEPAGYWGGGKDGKEFEKLKLASGLNYQVWIEFENSQLNVTMAPAGKKKPQRPLISKPINLSGVLLDEMYVGFSGSTGRMVDICRILAWSFSHSNFSIGDTLSTKHLPLYVHPKKLIYRSTGFIIGVILGALFVIGCCTLVFFSLSRTRREEQEEKIEDWELEYWPHRISYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVEVEVAVKRIPQEREEGMREFLAEVSSLGRMKHRNLVGLRGWCKKEKGNLILVYDFMSNGSLDKRIFECEEGKMLTWEERIEVLKNVAAGILYLHEGWDVKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHQGQVASTTRVIGTVGYIAPEVLRTGTASTMSDVFGFGILVLEVICGRRPIEEHKAGLIEWVMSLMVHGQLHNAVDKRLKAKGRYTIEEAERLVHLGLMCSNSDPSIRPTMRQVVKMLEGEMDNIESDEESIEMSLLGKIKSAAMWSKTECTFPYRGHPTFEEIRMFSYNSKASTSGSGTIPESDSDIIREGR.	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05631	696	CDD	lectin_legume_LecRK_Arcelin_ConA	25	261	IPR001220	GO:0030246
	Seca4g05631	696	Gene3D	Phosphorylase Kinase; domain 1	311	427	-	-
	Seca4g05631	696	FunFam	L-type lectin-domain containing receptor kinase S.4	23	268	-	-
	Seca4g05631	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Seca4g05631	696	ProSitePatterns	Protein kinases ATP-binding region signature.	356	379	IPR017441	GO:0005524
	Seca4g05631	696	FunFam	L-type lectin-domain containing receptor kinase S.4	428	634	-	-
	Seca4g05631	696	MobiDBLite	consensus disorder prediction	675	696	-	-
	Seca4g05631	696	CDD	STKc_IRAK	356	623	-	-
	Seca4g05631	696	Pfam	Protein kinase domain	351	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05631	696	ProSiteProfiles	Protein kinase domain profile.	350	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05631	696	SMART	serkin_6	350	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05631	696	Gene3D	Transferase(Phosphotransferase) domain 1	428	643	-	-
	Seca4g05631	696	PANTHER	-	42	625	-	-
	Seca4g05631	696	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	273	IPR013320	-
	Seca4g05631	696	Pfam	Legume lectin domain	25	264	IPR001220	GO:0030246
	Seca4g05631	696	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	311	427	-	-
	Seca4g05631	696	Gene3D	-	23	274	-	-
	Seca4g05631	696	SUPERFAMILY	Protein kinase-like (PK-like)	330	628	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05631	Seca-Chr4	106383868	106388788	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05631	22	569	Receptor kinase-like Gene Family	AT4G04960	57.428	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca4g05631		Pkinase	2.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05631	-		-	gmx:100804025	989.949