Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05629 ATGTCTTCTCTTAAGTTCCTTGTCATTATTCTTCACACTGTAAATATTGTGAGCTCTGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCCACAAACATCATTCTATTCGGAAATGCCACTATTCAGACCTCCATTCTGACTCTCACTAATGGCAGTTTCTTTTCCATAGGCCGTGCTTTTTACCCTAAAAAAATACCTACCAAATCAGCCAACTCTTCCACCCTTCTCCCCTTTGCAACATCCTTCATATTCTCTGTTGCCCCAATCAAAAACTCTAACATTGGCCATGGCTTTGCCTTCATATTTACACCGTCAAGAAGAGTAAATGGCACGAGCTCAGCTCAGTATCTTGGTCTTTTCAATTTCAGCAATGAAGGTAATCCTAAGAACCATGTTTTCGGCATTGAATTTGATACATTTAGAAATGAAGAATTCAGTGATATAAGTGACAACCATGTTGGTGTGGACATAAACTCGCTTACTTCCTCCACTTCACATGAGGCTGGCTATTGGGGTGGGAAAAATGACAAGGAATTTAAGGTATTGAAGATGAAAAATGGAGAGAATTATCAGGTGTGGATTGAATTTATGCATTCCCAGCTTAACGTTACCATGGCTCTGGCAGGACAGAAGAAGCCTCAAGTGCCTCTTATCAGTAAGAATATTAACATTTCTGGGGTTCTTATGGATGAAACTTATGTTGGGTTCTGTGCAGCCACAGGGATGCTAATAGACAGTGCTAAGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATTGGTGATGCTTTAATAACAGACAATTTGCCTTCATTTGTCCTTCATAAGAGGTGGTTGTCTGGAGCACGAGCTTTAGCTGTAGGGGTGACCAGTGCTGTGCTTGTGTTAATCATTGGTTGTGGTTATGTAGTGTTTTGCATTCTCTGTAGGTATAAGAAAGTAGAGGAAGAAATTGAAGACTGGGAACTGGAGTACTGGCCACATAGGATTAGTTTCCATGAGATTGATGCAGCAACAAGGGGGTTCTGTGAAGAGAATGTGGTTGCTATAGGAGGGAATGGGAAGGTATATAGAGGGGTTTTGCAAGGAGTAGAAGTTGCAGTCAAGAGAATCCCTCAAGATAGAGAAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTCGGACTAAGAGGTTGGTGCAAAAAAGAAAAGGGAAACTTGATTCTAGTTTATGACTTTATGAGTAATGGAAGTTTAGACAAAAGGATCTTTGAGTGTGAAGAGGGAAAGATGCTAACTTGGGAAGAAAGGATTGAGGTTTTGAAAAATGTAGCTGCAGGGATTCTATACCTGCATGAGGGTTGGGATGTTAAGGTGTTGCATAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGGTTAGGGGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTGGCCAGCACAACAAGAGTAATAGGGACAGTAGGATACATTGCTCCTGAAGTACTTCGAACAGGAACAGCATCAACCATGTCTGATGTGTTTGGTTTTGGAATTTTAGTGCTGGAAGTAATTTGTGGTCGAAGACCAATTGAAGAACATAAGGCAGGGCTAATTGAATGGGTGATGTCCCTAATGGTGCATGGCCAATTGCACAATGCTGTTGATAAAAGGTTGAAAGCTAAAGGGAGATACACCATTGAGGAAGCTGAGAGATTGGTACATTTGGGTTTAATGTGTTCAAATTCAGACCCTAGTATTAGACCAACGATGAGACAGGTTGTGAAAATGCTGGAGGGAGAAATGGACAACATTGAGTCTGATGAAGAAAGTATAGAGATGAGTTTGCTTGGAAAAATAAAATCAGCTGCAATGTGGTCCAAAACTGAATCTACATTTCCATACAGAGGTCACCCTACTTTTGAAGAAATTAGGATGTTCAGTTATAATTCTAAGGCATCTACAAGTGGCTCAGGTACCATTCCAGATTCAGATTCAGATATCATCCGAGAAGGCAGGTAA 2073 0.4038 MSSLKFLVIILHTVNIVSSVSTTEFVYNTNFNSTNIILFGNATIQTSILTLTNGSFFSIGRAFYPKKIPTKSANSSTLLPFATSFIFSVAPIKNSNIGHGFAFIFTPSRRVNGTSSAQYLGLFNFSNEGNPKNHVFGIEFDTFRNEEFSDISDNHVGVDINSLTSSTSHEAGYWGGKNDKEFKVLKMKNGENYQVWIEFMHSQLNVTMALAGQKKPQVPLISKNINISGVLMDETYVGFCAATGMLIDSAKILAWSFSNSNFSIGDALITDNLPSFVLHKRWLSGARALAVGVTSAVLVLIIGCGYVVFCILCRYKKVEEEIEDWELEYWPHRISFHEIDAATRGFCEENVVAIGGNGKVYRGVLQGVEVAVKRIPQDREEGMREFLAEVSSLGRMKHRNLVGLRGWCKKEKGNLILVYDFMSNGSLDKRIFECEEGKMLTWEERIEVLKNVAAGILYLHEGWDVKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTVGYIAPEVLRTGTASTMSDVFGFGILVLEVICGRRPIEEHKAGLIEWVMSLMVHGQLHNAVDKRLKAKGRYTIEEAERLVHLGLMCSNSDPSIRPTMRQVVKMLEGEMDNIESDEESIEMSLLGKIKSAAMWSKTESTFPYRGHPTFEEIRMFSYNSKASTSGSGTIPDSDSDIIREGR. 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05629 690 Pfam Legume lectin domain 23 261 IPR001220 GO:0030246
Seca4g05629 690 SUPERFAMILY Protein kinase-like (PK-like) 322 616 IPR011009 -
Seca4g05629 690 Gene3D Transferase(Phosphotransferase) domain 1 422 637 - -
Seca4g05629 690 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Seca4g05629 690 FunFam L-type lectin-domain containing receptor kinase S.4 422 628 - -
Seca4g05629 690 Pfam Protein kinase domain 352 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05629 690 PANTHER - 41 619 - -
Seca4g05629 690 CDD lectin_legume_LecRK_Arcelin_ConA 23 260 IPR001220 GO:0030246
Seca4g05629 690 CDD STKc_IRAK 355 617 - -
Seca4g05629 690 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 307 421 - -
Seca4g05629 690 ProSiteProfiles Protein kinase domain profile. 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05629 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Seca4g05629 690 Gene3D - 21 269 - -
Seca4g05629 690 FunFam L-type lectin-domain containing receptor kinase S.4 21 265 - -
Seca4g05629 690 MobiDBLite consensus disorder prediction 669 690 - -
Seca4g05629 690 SMART serkin_6 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05629 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 262 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05629 Seca-Chr4 106331225 106333297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05629 20 563 Receptor kinase-like Gene Family AT4G04960 57.961 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca4g05629 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05629 - - gmx:100804553 1138.64