LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05622	ATGGAGCCTCTGCTCAGAGGCGAAAGCAGTGACACTGGCCGGAGGTACCGGCAGCGAGGGATATTCGGCCGCTCCGATGCTATCACCTACGGCTCCAACTACGAGAAAGCCGCCGCCCTCGTCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAGATTCTTGATTCATCAAACTTTCAAAGTTATGCAAGATTTTATTTTATCTTCACTAAATGTGATCTCATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTGAGAAGTATACAACACAATCTTGCAAAGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTCTTATTTATGAGGGAATAGCTCTTGTTTTGCTAATCATTCATACTTTCTTCCCATTATCATATGAAGGGTCCCGTATATACTGGAAAAATGCTATTAATCAATTGAAGGCCTTCTGTATCTTAATTCTTGTTGCTGATATGCTGGTTTATGCTCTTTATATGTCTTCACTGGCTTTTGATTTTCTGCCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTGAATATTAGGGAGCTACGAGAAACTGTCATCATCTTGGTTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGACTTCTGTTCCTTGTTTTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTACGGTACTACATTATATCAGATGTTTCTTTTATTTACCACAGCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCACGTTGGTATTGCCTGTTTTTCATTCTCTTTGTGCTGGTGGGAGTATACTTTGTTACAAACTTGATCCTTGCCGTTGTTTATGAGAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTTTGAGACGGATCGAAAGAGAAGAGCTATGCTGGAAAAAGCTTTTAATCTCCTAGATACACATAATGTTGGATTTCTTAACAAAGATCAATGTATTAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAATATCTCCCGGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATGTAAAGATCAACAAGGATGAATTTGCTGATATTTGTAATGCCATTGCTTTAAAATTCCAGAAGGAGGAATCTCTTTCTTACTTTGAGTATTTAGTATTCTACCATTCACCCACCTCAAAGAGATTGAAAGCCTTCGTGAAGAGCCCCATGTTTGGATACCTAGTGTCCTTCATTCTCATACTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCGTTTTTGGGTGGATATACGTAATAGAAATGGCTCTAAAGGTTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATCATCACATTGATAATTGTCATTGGAGAAACTATAACTTTTGCCTCACCTGATGGTCTGCTTTTTTTCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGCATGTCAAGCGATACCGAGGCTTTGTGGCAACTTTCTTAACGCTTATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGTATTTATTGCTCACTTGGTGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCCAAATTGGAAACAACAGACCTTGCGGATAATGAGTATCCTTTGTTCATCTATAAAACTATCTCCTTTAAACCTGTAGCAGTGGGTTTAATCCAGTAA	1890	0.3878	MEPLLRGESSDTGRRYRQRGIFGRSDAITYGSNYEKAAALVDLAEDGVGIPEQILDSSNFQSYARFYFIFTKCDLIWSLSYFALIVLNFLEKPLWCEKYTTQSCKDREYFFLGQLPYLTAAECLIYEGIALVLLIIHTFFPLSYEGSRIYWKNAINQLKAFCILILVADMLVYALYMSSLAFDFLPFRIAPYIRVVLFVLNIRELRETVIILVGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYGTTLYQMFLLFTTANNPDVWVPAYKSSRWYCLFFILFVLVGVYFVTNLILAVVYESFKSELVKQVFETDRKRRAMLEKAFNLLDTHNVGFLNKDQCIRLFEELNKYRTLPNISREEFELIFDELDDSHDVKINKDEFADICNAIALKFQKEESLSYFEYLVFYHSPTSKRLKAFVKSPMFGYLVSFILILNLVAVIIETTLDIENNSGQKVWQVVEFVFGWIYVIEMALKVYAYGFENYWRDGQNRFDFIITLIIVIGETITFASPDGLLFFSNGEWIRYLLLARMLRLIRLLMHVKRYRGFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPKLETTDLADNEYPLFIYKTISFKPVAVGLIQ.	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05622	629	CDD	EFh	329	394	IPR002048	GO:0005509
	Seca4g05622	629	FunFam	Two pore calcium channel protein 1	424	556	-	-
	Seca4g05622	629	Gene3D	-	423	557	IPR027359	-
	Seca4g05622	629	Pfam	EF-hand domain pair	330	394	IPR002048	GO:0005509
	Seca4g05622	629	Pfam	Ion transport protein	131	313	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Seca4g05622	629	Pfam	Ion transport protein	432	598	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Seca4g05622	629	PANTHER	TWO PORE CALCIUM CHANNEL PROTEIN 1	3	614	IPR044581	GO:0005245
	Seca4g05622	629	Gene3D	-	312	396	-	-
	Seca4g05622	629	SUPERFAMILY	EF-hand	315	398	IPR011992	-
	Seca4g05622	629	SUPERFAMILY	Voltage-gated potassium channels	431	591	-	-
	Seca4g05622	629	FunFam	Two pore calcium channel protein 1	204	315	-	-
	Seca4g05622	629	Gene3D	-	204	311	-	-
	Seca4g05622	629	ProSiteProfiles	EF-hand calcium-binding domain profile.	366	401	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05622	Seca-Chr4	106153477	106174546	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05622	2	613	Ion Channels	AT4G03560	67.863	0.0	874

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05622	K16900		-	gmx:100806160	1050.43