Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05617 ATGGCGTCTGGACCTTCCGGTCGCGGTAACGGCGGCTCCAAGGGTTTTGATTTTGGTTCCGATGACATCCTTTCTTCATATGAGGACTATACCAACCAGGATTCTTCTAATGGCAGTCACATCGATCCCAGTAAGTTCTTGCAGGATTTTCACATATCAAGAATGACAAAAGCATCAACATATCCTGTTACTGCCTATAGCTCACCTGAAGATTCTTTAAGCCAAGATGTGATTGCGACTGTTGAGAAGAGTATGAAAACATATGCTGACAACCTTATGCGGTTTCTTGAGGGAATCAGCTCGAGGCTGTCACAGTTGGAATTATATTGTTACAATCTCGACAAATCAATTGGAGAAATGAGATCTGATTTAAATAGTGACCATGAGGAGGCAGATTCAAAACTCAAATCTCTTGAGAAACACCTTCAGGAAGTACACAGGTCTGTACAAATTTTAAGAGACAAGCAAGAGCTAGCCGAGACTCAGAAAGAATTAGCCAAGCTTCAACTTGTTCAGAAAGAATCATCTTCCTCAAGCCATCCGCAGTCTAATGAGGAAAGGTCTTCGCCTTCTGCAATGGATCAAAAAAGAACCGATAATGCATCTGACACACATAACCAGCAGTTAGCTCTTGCCCTGCCTCATCAAGTTGCCTTCCAGCAGCAGCCTGTGGCACCTCCTTCTCAAGCTCCAGCTCCAAATGTGACTCAAGCCACTCAACAACCTCATTATTACATGCTGCCCAATCCCCCAGCTATGTCCCAGCTTCCCCAGAATCAGTATCTTCCGTCTGATCCACAGTATCAAAATCCACAATCAACATCATCTCAAGCAACCCAGTCCCTGCCAGTGCAACAATTTTCCCAGTATCAGCAGCCACAGCAACAGCAATGGCCTCAACAGTTACCTCAGCAGGTAGAACCTCCGCAACCACCCTCAATGCTGTCTCAAATGAGACCCCCCACAACAAATGTTTACACTCCATACATTACAAGCCAAGCTCCAAATCCACCTCCCATTGGAACACTGCCAAATAGCATGCCATATTCAGGGATTCCACCCCCAGGATCTAACCGTGGCGATGCCATGCCATATGGATATAGTGGAACTGGTAGAACAGTTCCACAGCAACCTCCACCCCAGCAAATCAAGGGCTCTTTTCTAGCACAACCAGGTGTGTATGGAAGTAGCGGGAGCCACGCCACGCATCCTCCTGCTAGTGCATACATGGTGTATGATGGTGAGGGTGGCAGAGCACATTATCCACCCCAATCTACTACTTTTGCTCAAGCTGGATATCCTCCAACAAGTGCTTCCCTTCAGAACCCTGCACCACATAATCTTATGGCCCGGAATCCTAGCCAGCCACAATATATCCGCAGCCATCCCTACAATGAATTGATTGAGAAATTGGTGAACATGGGATTTAGGGGTGACCATGTGGCAAGCGTTACTCAGAGGATGGAAGAAAGTGGGCAACCTATAGATTTTAACTCTCTACTTGACCAGTTGAATGTACATAGTTCAGTGGGTCCTCTGAGGGGATGGTCAAGGTAA 1557 0.4637 MASGPSGRGNGGSKGFDFGSDDILSSYEDYTNQDSSNGSHIDPSKFLQDFHISRMTKASTYPVTAYSSPEDSLSQDVIATVEKSMKTYADNLMRFLEGISSRLSQLELYCYNLDKSIGEMRSDLNSDHEEADSKLKSLEKHLQEVHRSVQILRDKQELAETQKELAKLQLVQKESSSSSHPQSNEERSSPSAMDQKRTDNASDTHNQQLALALPHQVAFQQQPVAPPSQAPAPNVTQATQQPHYYMLPNPPAMSQLPQNQYLPSDPQYQNPQSTSSQATQSLPVQQFSQYQQPQQQQWPQQLPQQVEPPQPPSMLSQMRPPTTNVYTPYITSQAPNPPPIGTLPNSMPYSGIPPPGSNRGDAMPYGYSGTGRTVPQQPPPQQIKGSFLAQPGVYGSSGSHATHPPASAYMVYDGEGGRAHYPPQSTTFAQAGYPPTSASLQNPAPHNLMARNPSQPQYIRSHPYNELIEKLVNMGFRGDHVASVTQRMEESGQPIDFNSLLDQLNVHSSVGPLRGWSR. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05617 518 Pfam UBA-like domain (DUF1421) 464 508 IPR010820 -
Seca4g05617 518 MobiDBLite consensus disorder prediction 252 303 - -
Seca4g05617 518 MobiDBLite consensus disorder prediction 169 203 - -
Seca4g05617 518 Coils Coil 121 171 - -
Seca4g05617 518 MobiDBLite consensus disorder prediction 169 189 - -
Seca4g05617 518 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 1 517 - -
Seca4g05617 518 MobiDBLite consensus disorder prediction 244 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05617 Seca-Chr4 106110586 106114372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05617 77 192 Trihelix Transcription Factor Family AT5G14540 35.345 4.91e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05617 - - gmx:100527106 675.626