Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05609 ATGGCCTTAAATCAGTATTTTGAGGAGGGTGTGCCCCAAATAGATTCCTTTGAAGATAAATCATCTCTGGAAATGCAGAAATGTGCCAGTGATGCTATTGCAGATTCTGATAGAAACGCCTACAGTGGCTTTGACTGCAACATCTGCTTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTATAAATGGCTTAATTTCCATACCATCTCATCTGAAAATGAAGAGAAGCAGATGCCACAATGTCCAGTATGCAAATCACAAATTTCAGAGTCATCCCTTGTTCCACTATACGGCCGTGGCCAAACAACATTACCTTCTAATGGCAAAACTCAGCAAGTAGGGATGATCATACCAAGAAGACCAGCTTGTCCTTCATGGGTGGCTCACTTACCAAGATCACATGATACTTCAACTGTTTCACAACACTCTTCTCAAGTTTATCATCCCCATTATGCTAGACATCCTCAACAATTCAACTCAATTTCAAGCAGTTACACCTCACCAATGCTTAACACAGGAGGTTCACTAACTTATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTTGGAAACCAGGTGACAAACATATATACATACCCTAATTCATATGATCTTTCGGGGACCAGTAATACAAGGATAAGAAGGCATTTAATGCAAGCTGATAAGTCACTCAGTAGAATCTGTTTTTTCCTCCTTTGTTGCATAGTTTTGTGCCTTCTCTTATTCTGA 762 0.4108 MALNQYFEEGVPQIDSFEDKSSLEMQKCASDAIADSDRNAYSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHTISSENEEKQMPQCPVCKSQISESSLVPLYGRGQTTLPSNGKTQQVGMIIPRRPACPSWVAHLPRSHDTSTVSQHSSQVYHPHYARHPQQFNSISSSYTSPMLNTGGSLTYGVFGEMIYARVFGNQVTNIYTYPNSYDLSGTSNTRIRRHLMQADKSLSRICFFLLCCIVLCLLLF. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05609 253 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Seca4g05609 253 SMART ring_2 46 94 IPR001841 -
Seca4g05609 253 SUPERFAMILY RING/U-box 36 101 - -
Seca4g05609 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g05609 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 111 IPR013083 -
Seca4g05609 253 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Seca4g05609 253 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05609 Seca-Chr4 105922714 105925877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05609 23 253 C3H Transcription Factor Family AT4G28270 37.815 5.22e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05609 K10666 - gmx:100785491 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05609 4 105922714 105925877 Seca4g05609 4 105922714 105925877 ECH