Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05604 ATGCAGCACCACCGTGTCTCCGCCGTATTTCTTTTAAGCTTCTTCTGTAGACTTGTGCTAATATGCGCGCAGGGACAGCCTCAACACCATGTCCTTGATCCACATTGGTATCCGGGTACCGCCACCTGGTACGGCGACCCCGAGGGAGACGGTAGCACCGGAGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCGTTGAGGGCGAGAGTAGGAGCAGTGGGGCCAGTGCTGTTTAGGAGTGGAGAAGGGTGCGGGGCATGCTATAAGGTGAAGTGCTTGGACGCAAGCATATGTGCGAAGCGAGCAGTGACGGTTATAATAACAGATGAGTGCCCTGGCTGCCCCTCCGACAGAACACACTTTGACCTTAGTGGCGCCGCCTTTGGCCGCATGGCTGTTGCCGGCGAGAACGGTCAACTCAGGAACCGAGGTGAAATTCCAGTCATTTACCGAAGGACACCATGCATATATGGTGGCAAAAATATTGCCTTCCAAGTTAATGAAGGTTCCACACCTTTTTGGCTATCACTTCTGGTCGAGTTTGAGGAAGGAGATGGGGATATTGGCTCCATGCATATACAAGAAGCAGGGTCTAGTGAGTGGCTGCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAAAGGACCTTTCTCTGTGAAATTAAGCACATCCACGGGGAGAAGCCTCACTGCTAAAAATATGGGTGCTCTGCAATCTACACTTATCTACCTGATTATATTACAGGCATGCAAGCTTTCTGTTTGCTGGGAGGAAGAATGGAAGTCTGCCACTGCAACATACGTCAAAGATACAGAGGGATCACTCATTACAGAAGGAGCTTGTGGTTATGGAGATCTCCACAAGGTCGACTATGGGAAATATAGTACTGGGTTAAGCACCTTCTTGTTCAACAGAGGGAGTACTTGTGGGGCTTGCTATGAGATCAGATGCGTTGACCACATCTTATGGTGCTTGCAGGGAAGCCCCTCTGTAGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGACTCGCAGCTGATTATGGTGGCTGGTGCAATTTTCCAAAAGAACATTTTGAGATGTCTGAAGCTGCATTCGCTGAAATATTCAAGAGAAAAGCTGATATAGTGCCAGTTCAATATAGAAGAGTAAAATGTCAAAGAAGTGGTGGCCTGAAATTCACAATGAGTGGAAGTTATCACTTCTATCAAGTTCTGATTACCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAGTTATAACAGGATGGATACCCATGGCAAGGAATTGGGGCCAAAACTGGCATTGCAATGTGAACCTCCAACGACAGCCTCTGTCCTTTGAGGTGACTATCAGCAGCGGAAAAACAGTCACATCTTACAATGTAGCCCCTGCAAACTGGCAATTTGGACAGACATTTGAAGGAAAACAGTTCTAG 1479 0.478 MQHHRVSAVFLLSFFCRLVLICAQGQPQHHVLDPHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPVLFRSGEGCGACYKVKCLDASICAKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVAGENGQLRNRGEIPVIYRRTPCIYGGKNIAFQVNEGSTPFWLSLLVEFEEGDGDIGSMHIQEAGSSEWLQMNHLWGANWCIIGGPLKGPFSVKLSTSTGRSLTAKNMGALQSTLIYLIILQACKLSVCWEEEWKSATATYVKDTEGSLITEGACGYGDLHKVDYGKYSTGLSTFLFNRGSTCGACYEIRCVDHILWCLQGSPSVVVTATDFCAPNYGLAADYGGWCNFPKEHFEMSEAAFAEIFKRKADIVPVQYRRVKCQRSGGLKFTMSGSYHFYQVLITNVGLDGEVVAVKVKGVITGWIPMARNWGQNWHCNVNLQRQPLSFEVTISSGKTVTSYNVAPANWQFGQTFEGKQF. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05604 492 FunFam Expansin B3 22 158 - -
Seca4g05604 492 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 162 IPR007112 -
Seca4g05604 492 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 410 489 IPR007117 -
Seca4g05604 492 SUPERFAMILY Barwin-like endoglucanases 32 161 IPR036908 -
Seca4g05604 492 CDD DPBB_EXPB_N 36 157 - -
Seca4g05604 492 Gene3D - 157 245 IPR036749 -
Seca4g05604 492 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 242 IPR007117 -
Seca4g05604 492 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 286 400 IPR007112 -
Seca4g05604 492 Gene3D - 401 492 IPR036749 -
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 475 489 IPR007118 GO:0005576
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 307 325 IPR007118 GO:0005576
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 383 399 IPR007118 GO:0005576
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 285 303 IPR007118 GO:0005576
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 267 282 IPR007118 GO:0005576
Seca4g05604 492 PRINTS Expansin/Lol pI family signature 437 451 IPR007118 GO:0005576
Seca4g05604 492 PANTHER EXPANSIN-A15 257 492 IPR002963 GO:0009664
Seca4g05604 492 Gene3D - 22 156 IPR036908 -
Seca4g05604 492 Gene3D - 255 396 IPR036908 -
Seca4g05604 492 SUPERFAMILY PHL pollen allergen 397 489 IPR036749 -
Seca4g05604 492 Pfam Lytic transglycolase 305 390 IPR009009 -
Seca4g05604 492 Pfam Lytic transglycolase 77 151 IPR009009 -
Seca4g05604 492 PRINTS Expansin signature 339 349 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 375 388 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 298 312 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 358 375 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 399 411 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 325 336 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 411 432 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 446 467 IPR002963 GO:0009664
Seca4g05604 492 PRINTS Expansin signature 475 491 IPR002963 GO:0009664
Seca4g05604 492 SUPERFAMILY PHL pollen allergen 162 241 IPR036749 -
Seca4g05604 492 SMART dpbb_1 72 152 IPR007112 -
Seca4g05604 492 SMART dpbb_1 303 390 IPR007112 -
Seca4g05604 492 Pfam Expansin C-terminal domain 402 478 IPR007117 -
Seca4g05604 492 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Seca4g05604 492 SUPERFAMILY Barwin-like endoglucanases 267 418 IPR036908 -
Seca4g05604 492 CDD DPBB_EXPA_N 267 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05604 Seca-Chr4 105687250 105693444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05604 241 492 Expansin Gene Family AT4G38210 63.137 2.28e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05604 - - gmx:100809013 448.358