Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05595 ATGGCTGCAGCTAAGAACAGTGGCAAATTCAGCAAGGATGTGAGTGGTGATGACCCTCACAATATGGGTGAAAGCCAAGATTGGGAGATTGAGAAAAAGGGAAAGAGTCAGAGTCAGAGTCAGAGTCAGAGGCGTCCATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCACAACATAATAGGCCTTTGAAGAAGATTCGTAGCCCTGAACGTCAAAACCCAAATCAACATTTACCTTCCATGTCCTTACAACCTTCTCCCTCCTCTGTTCCTCCTTCTTCAAGACTCATCTTTCCTTTTGCTTTTGATGGTTCCCAACAACACCCCATGCATTTCCCACACCAATTTGGAACCACAAATTTGCCACTTTTCCGTCCACCCATTCAAACAACACAGCAGCAACAAATGATATCTTTCGGGTCACAACAACAGCAACAACAGAACTTAGCATATCCACCAATCTTAGCAAGAGATTCAACTTCCACTTTGCTACAACAACAGCAACAACATCACCAGCAGCTTCTTCAGTATTGGAGTGATGCATTGAATCTAAGTCCAAGAGGAAGGATGATGATGATGATGAACAACAACAACAGGTTAGGACCACATGGTAGCACATTGTTTAGACCCCAAGTTCAACCCATAAACACTACCAAACTCTACAGGGGTGTGAGACAACGCCATTGGGGAAAATGGGTAGCTGAAATTCGTCTCCCTAGAAACAGGACTCGTCTTTGGCTTGGCACATTTGACACAGCAGAAGATGCTGCTATGGCCTATGACCGTGAAGCCTTCAAGTTAAGAGGAGAGAATGCAAGGCTCAATTTCCCTGAACTTTTTCTCAACAAGGATAAACCACAATCAGAAACACAAACACCTTCTTCACCAGCTCCAACAACAACTACTTCATCTGTTTCTGTTTCTTCTCCTTCTAGTCACAGCAACACAAAGCAGTCTGAACCTGTTTCTTCTAATGTGCATCCACTTCCAAAAGAAGAGTCAAATGAGAATGACTCTGGAATTGGATCTAGTGATGCTACGGTGAGTGATGAGGTTCATGCAGCTGTTGAAGCAGGGGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGGGTGAAATGTCAGCATGGTTCAATGCTATTCCAGCTGGTTGGGGTCCAGGTAGTCCTGTGTGGGATGATTTAGACACCAACAATGATCTTTTTCTACACTCACACCTTCCTTTTTCAAATCCCAATCAACAAGGGTTCAATGATGTTGATCCTCAGAGACAAGAACATAATAACATGGGACCAGGTTCTTCCATGAGGCCCTTCTTTTGGAAAGATCAAGATTGA 1335 0.4367 MAAAKNSGKFSKDVSGDDPHNMGESQDWEIEKKGKSQSQSQSQRRPWKPVFDEASMSQHNRPLKKIRSPERQNPNQHLPSMSLQPSPSSVPPSSRLIFPFAFDGSQQHPMHFPHQFGTTNLPLFRPPIQTTQQQQMISFGSQQQQQQNLAYPPILARDSTSTLLQQQQQHHQQLLQYWSDALNLSPRGRMMMMMNNNNRLGPHGSTLFRPQVQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKPQSETQTPSSPAPTTTTSSVSVSSPSSHSNTKQSEPVSSNVHPLPKEESNENDSGIGSSDATVSDEVHAAVEAGEGVSQSQELVWGEMSAWFNAIPAGWGPGSPVWDDLDTNNDLFLHSHLPFSNPNQQGFNDVDPQRQEHNNMGPGSSMRPFFWKDQD. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05595 444 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 32 394 - -
Seca4g05595 444 MobiDBLite consensus disorder prediction 409 444 - -
Seca4g05595 444 Gene3D AP2/ERF domain 220 278 IPR036955 GO:0003700|GO:0006355
Seca4g05595 444 MobiDBLite consensus disorder prediction 284 346 - -
Seca4g05595 444 CDD AP2 219 279 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 PRINTS Ethylene responsive element binding protein signature 243 259 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 FunFam Ethylene-responsive transcription factor 2 219 278 - -
Seca4g05595 444 MobiDBLite consensus disorder prediction 409 431 - -
Seca4g05595 444 SUPERFAMILY DNA-binding domain 220 278 IPR016177 GO:0003677
Seca4g05595 444 MobiDBLite consensus disorder prediction 281 347 - -
Seca4g05595 444 MobiDBLite consensus disorder prediction 1 95 - -
Seca4g05595 444 ProSiteProfiles AP2/ERF domain profile. 220 277 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 SMART rav1_2 220 283 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 MobiDBLite consensus disorder prediction 72 93 - -
Seca4g05595 444 Pfam AP2 domain 221 269 IPR001471 GO:0003700|GO:0006355
Seca4g05595 444 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05595 Seca-Chr4 105582051 105583433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05595 1 410 AP2-EREBP Transcription Factor Family AT2G20880 42.092 1.91e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g05595 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05595 - - gmx:100101898 469.929