Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05579 ATGGGGTGTTGTGTCTCAACAAGCAGTCGGAGTACTTGTAGTAGCAATAACAATGGAGACATGGTCTCTCCATCTTGTCTAGAAATGGGATTCTGTGGTCAAAAGAGAACAAGGAGAACATTCTCTGATCATGTTGTCTCTCTGCACAAGTTACCATCCTTACCAAACAGAATTTTCACTAATGGAAAGAGCCGGTCTTCTTGCATATTCACACAGCAGGGTCGTAAGGGTATTAATCAGGATGCCATGATTGTATGGGAAGATTTCATGTCAGAAGATGTGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACACGGTCACCTTGTTGCGCGCAAAGTCAGGGATGCCTTGCCAATAAAACTGCTTTCATGTTTGCATTCCTGCGAATTGAGGCAAAATGGTTCAGGTAAAGCTTGTTTTAAGGGTGACATAAAGCCTGAAAGTGGAGAGTCTGAGAAGGATTTCTCTGCTGAGGATACACTGAATTCTATGTGGAGAGATGCTTTCATGAAGGCATACAAGGCTATGGACAAAGATCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTTACTATAGTGAAACAGGGTTCAAATTTGTTTATGGGCTATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAATAATGACTTGATGGTGGCAATTCAGTTGTCTGTTGATTTGAAGCCTGATTTGCCAAAAGAAGCTGAAAGAATTAAACGATGCAAGGGTAGAGTATTTGCATTGCAAGATGAGCCAGAAGTTCCTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGTTGCTTACAGACAGAGATCAATTCATTGTTCTAGCCTCAGATGGGGTCTGGGATGTTTTGAGCAATGAAGAGGTGGTTGAGATAGTATCTTCAGCACCAAGTCGATCATCAGCAGCAAGGGTTCTGGTAGATTCTGCTGCTCGAGAGTGGAAACTCAAATATCCAACTTCAAAAATGGATGATTGTGCTGTTGTGTGCCTATTTTTGGATGGGAAAATGGACCCAGAATCTGATTGTGATGAGCCATGTTTTTCCTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAGTTGAGTCAGATGATGGACAGAAGTCTGAGCCATCTTTACAAAGGAACTTTACTGTGAGATCCTCAGAAGAAAATGAGACCTATGGAGGAGCATCTGTTGATGTTGAAGATGGAACGACATCAGCTGAAGATCAAAACTGGTCAGGTCTGGAGGGTGTCACCAGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCAGAGGAAAGGCCAAACTCTTGA 1413 0.4303 MGCCVSTSSRSTCSSNNNGDMVSPSCLEMGFCGQKRTRRTFSDHVVSLHKLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEDVIFCGVFDGHGPHGHLVARKVRDALPIKLLSCLHSCELRQNGSGKACFKGDIKPESGESEKDFSAEDTLNSMWRDAFMKAYKAMDKDLRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAIMGSKDNNDLMVAIQLSVDLKPDLPKEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPSRSSAARVLVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDPESDCDEPCFSSATIQSNHSGNPVESDDGQKSEPSLQRNFTVRSSEENETYGGASVDVEDGTTSAEDQNWSGLEGVTRVNSLVQLPRFSEERPNS. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05579 470 CDD PP2Cc 65 370 IPR001932 -
Seca4g05579 470 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Seca4g05579 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Seca4g05579 470 MobiDBLite consensus disorder prediction 388 426 - -
Seca4g05579 470 PANTHER PROTEIN PHOSPHATASE 64 368 IPR015655 GO:0004722|GO:0006470
Seca4g05579 470 Pfam Protein phosphatase 2C 141 348 IPR001932 -
Seca4g05579 470 SMART PP2C_4 55 368 IPR001932 -
Seca4g05579 470 MobiDBLite consensus disorder prediction 388 450 - -
Seca4g05579 470 Gene3D - 57 372 IPR036457 -
Seca4g05579 470 FunFam probable protein phosphatase 2C 52 57 373 - -
Seca4g05579 470 MobiDBLite consensus disorder prediction 436 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05579 Seca-Chr4 105226324 105231495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05579 1 470 PP2C-type Phosphatase Gene Family AT1G03590 69.874 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05579 - - gmx:100798340 847.425