Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05567 ATGGGTGAGAAGAGATCTGCTTCACAGTACAAGAGAGTGAAGATCCATGGACAAGTTCTATTGGGATTTATGTTGATCTGCTTAGTACAGTTTTCTCTTGCAGACACTAATCCTACTGATGTTGCTGCAATTAATAGCTTATATACTGCATTGGGCAACCCCGTTCTTCCTGGGTGGGTTTCAAGTGGGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGTAATGGTTCAGAAATACAATCAATAGTCCTCAATGGAGCAAATTTGGGAGGAGAACTGGGTGATAGCTTGGGAACGTTTGTTTCTATCAGAGCAATAGCTCTAAGCAACAACAACATTGGGGGAAGCATTCCATCCAGTTTGCCAGTCACCTTGCAAACCTTTTTTCTTTCAGATAACCAGTTCACAGGAAGTATTCCAACCTCTTTATCTACATTGACTGAACTGACTGACATGTCTCTTAATGACAATCTTTTAACTGGAGAAATTCCAGATGCCTTTCAGTCTCTTATGCATTTGATCAATCTTGATTTATCTAGTAATAATTTGAGTGGGGAATTGCCTCCATCTCTGGAGAATTTGTCAGCTCTGACCACCTTAAATTTACAGAACAATAATCTGTCTGGGACCCTTGATGTTTTACAAGACCTTCCACTGAAAGATTTGAATGTCGAGAACAACCAGTTTGCTGGACCAATACCTCAAAAGTTGTTCAGCATCCCTAACTTCAGACAAGATGGAAACCCGTTTAATCTCAGTGGCAATGCTACTGTAGCTCCAGCTCATCCACCTCGTTCTCCGGTGACACCACCACCACCACCACCACCACCAGGAACTGTGGTTTCTGGTACTCCTTCTGGACGTGTTCCTACTAAACAGGCTGATGGACCAAGTGCAGCAAAGGAATCAAATTCTGGGAAATCAAAAAAGTCCACCAAAAGGGTGGTTTGGATAACTATTTCTGGTATATTGGTGTTTCTTATTTTGGCACTGGCGCTTGTTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAACTTCCAACTCCAAGCAACATCAAATTGGTGCATATGGAGGTGAAAGACAGAATCCTAGGAATAATGGGGCTTTAGTCCAACCACCTAGTCAAACTGAGAAAGTACCAAAAGGAGCTGTTGTGAAGCCTAAAGAGGATCATCAAGCAGAGAAAGACAAGAAAAGCATGGGAACACTACCAAAGCTGTTAGATCATGAGATAGATATGAGTGCAGTAGATGTAAATTTAATGCCTCCTCCACCCCCACCTCCCCCGCCTCCACCTCCTCCACCACTTTCAGCTGAGAAGGTGATTGTGGAGCCAACCACATTCAGAGGGGCTGACATCAATCCTTCCAGAAAAAGTCCAGTTCCTCCCACTTTCGCAAAATCATTCACCATTGCATCCCTTCAACAATATACAAATAGCTTTTCGCAAGACAATCTTATAGGATTAGGCATGCTGGGGACTGTGTATAGGGCAGAGCTTCCCGATGGGAAGATACTTGCTGTGAAGAAACTGGACAAGAGAGTTTCTGATCACCAAAAGGATGACGAGTTTCTTGAACTGGTAAACAATATTGACAGAATCCGGCATGCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCACGGTCAAAGGCTTCTAATCTATGAGTACTGCAGTAATGGGTCACTACAGGATGCACTCCATTCAGACGATGAATTCCAAACAAGACTGTCATGGAATACTCGCATTCGGATAGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCTGCTAATATTCTCCTTGATGATGATTTATCCGTGCGTGTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTCTGTTAGTCAGCTCTCAGGCCAACTGCTAACAGCTTATGGCTACGGGGCCCCAGAATTTGAGTCAGGAATTTACACATACCAGAGTGATGTATACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTATGACAGGAAGCGTCCTCGAGGAGAGCAGTTTCTGGTAAGATGGGCAATTCCTCAACTTCATGATATTGATGCATTATCAAGGATGGTTGATCCTTCTCTGAATGGAGAATACCCTGCCAAATCATTGTCAAATTTTGCGGACATTATTTCTAGATGTGTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACCTACTAAATATGATAAGGAGGGAATCTCAGCAAAATGAATAA 2322 0.4332 MGEKRSASQYKRVKIHGQVLLGFMLICLVQFSLADTNPTDVAAINSLYTALGNPVLPGWVSSGGDPCGQGWQGVQCNGSEIQSIVLNGANLGGELGDSLGTFVSIRAIALSNNNIGGSIPSSLPVTLQTFFLSDNQFTGSIPTSLSTLTELTDMSLNDNLLTGEIPDAFQSLMHLINLDLSSNNLSGELPPSLENLSALTTLNLQNNNLSGTLDVLQDLPLKDLNVENNQFAGPIPQKLFSIPNFRQDGNPFNLSGNATVAPAHPPRSPVTPPPPPPPPGTVVSGTPSGRVPTKQADGPSAAKESNSGKSKKSTKRVVWITISGILVFLILALALVLFIPRCSRRERVDRTSNSKQHQIGAYGGERQNPRNNGALVQPPSQTEKVPKGAVVKPKEDHQAEKDKKSMGTLPKLLDHEIDMSAVDVNLMPPPPPPPPPPPPPPLSAEKVIVEPTTFRGADINPSRKSPVPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGTVYRAELPDGKILAVKKLDKRVSDHQKDDEFLELVNNIDRIRHANIVELIGYCAEHGQRLLIYEYCSNGSLQDALHSDDEFQTRLSWNTRIRIALGAARALEYLHEQCQPPVVHRNFKSANILLDDDLSVRVSDCGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAIPQLHDIDALSRMVDPSLNGEYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNE. 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05567 773 Gene3D Transferase(Phosphotransferase) domain 1 565 773 - -
Seca4g05567 773 Gene3D Phosphorylase Kinase; domain 1 460 564 - -
Seca4g05567 773 MobiDBLite consensus disorder prediction 265 283 - -
Seca4g05567 773 MobiDBLite consensus disorder prediction 388 410 - -
Seca4g05567 773 SUPERFAMILY L domain-like 36 245 - -
Seca4g05567 773 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 456 564 - -
Seca4g05567 773 MobiDBLite consensus disorder prediction 346 410 - -
Seca4g05567 773 SUPERFAMILY Protein kinase-like (PK-like) 462 761 IPR011009 -
Seca4g05567 773 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 758 - -
Seca4g05567 773 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Seca4g05567 773 ProSiteProfiles Protein kinase domain profile. 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05567 773 Gene3D Ribonuclease Inhibitor 37 264 IPR032675 -
Seca4g05567 773 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 565 773 - -
Seca4g05567 773 MobiDBLite consensus disorder prediction 286 313 - -
Seca4g05567 773 MobiDBLite consensus disorder prediction 251 313 - -
Seca4g05567 773 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Seca4g05567 773 SUPERFAMILY Formin homology 2 domain (FH2 domain) 431 441 - -
Seca4g05567 773 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Seca4g05567 773 Pfam Protein tyrosine and serine/threonine kinase 490 759 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05567 Seca-Chr4 104942863 104949908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05567 26 768 Strubbelig Receptor Gene Family AT4G03390 64.286 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca4g05567 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05567 - - gmx:100811490 1203.35