Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05521 ATGACTTCCATTAAGGTCATAGAACAGTGTCAAGTTGCACCACCACCTGGTTCACTTCCCTCAACCACTCTTCCGCTCACTTTCTTTGACATCCCATGGTTTTACTGCCACCCTGTGCAACGCATCTTCTTCTACCACTTTCCTCATCCCACACACCACTTCCTCCAAACAACACTTCCAATTCTCAAGCACTCTCTTTCCCTCTCCCTCCAACACTTCTTCCCCTTCTCCTCCAATCTCATCGTCCCACCAAACCCCCACCACCACGTCCCTTACATCCGCTATCTCGATGGAGACTCTCTCTCCTTCACCGTTGCAGAGTCCGCCGCAGACTTCAACCTCCTCATATCCGATTCACCACAGGACGTTCAAAACTGGCACCCCCTTGTCCCTACCCTGCCTTCACATCTTACAGAGGAGGATGGCACACGTGTGTTCCCTCTCATGGCCATTCAGATCACGGTTCTACCAAACTCTGGATTCAGCATCTGCCTCACGTTCAACCACCTTGCTGGAGATGGAAAATCACTTCATCATTTCATTAAGTATTGGGCCTCTGTTTCAAAGGCAACAAGATCAGGGGATTTGAGTTTGACTCCCCTTGAAGGCTCTCTGTCTCTTCCTTTCCATGATAGGAACAGAGTAAAAGACCCAAAGGGGCTTAAGCTTGTTTACACACGGGAACTACTAGATTCTGAGTCGGAAAAGATGGAGTTTGCAGGGATCGTGCAAGATGTTTACACTAACAAGGTACGTGCCACTCTTGTGTTGAGTCGTGAACGAGTTGAGAAACTAAAAAAATGGACCACTCTTAAATGTGCTTTAGGGATACAACACGTGTCAACCTTTGTGGTAACGTGTTCGTTGATTTGGGTTTGTATGATTAAATCAGAGCAGAGCAATGTTAATTGTGTTGATGAACATCAACTCTGCTACTTGGTGTTTCTAGCGGATTGTCGTGGTCGTCCTGAACTTTCAATACCCTCAACGTACTTTGGGAATTGCCTTGCAACTTGCATTGTGGCAATCAAGAGGGGTGAGCTAGTGGGAGAAAATGGGATTGTTGAGGTAGCTAATGCTATTCAAAGGGAAGTTAGAGATTGGAAGAAAGATGCTTTACGAAGGACTGAAACGTTGATGTCAGATTATAGAGAATTAGCAAAACCAGGTCAGTGTGTGGTAGTAGTTGCAGGGTCACCAAAACTGGGTGTGTATGAGACTGATTTTGGGTGGGGAAAGCCTAAGAAGTCTGAAGCAGTGCATCTTGATTCATCAGGATCAATTTCTCTTTCTGATTGTAGAGACAAAGAAGGTGGAAGTGGAATTGAGCCTAAGAAGTCTGAAGCAGTGCATCTTGATTCATCAAGATCAATTTCTCTTTCTGATTGTAGAGACAAAGAAGGTGGAATTGAGGTTGGATTGGCATTTGAAAGGATTCAAATGAGTAATTTCCTCAACATCTTAGAAGAACAACTTAATAATATTGTAGCACATGAGTGA 1500 0.4467 MTSIKVIEQCQVAPPPGSLPSTTLPLTFFDIPWFYCHPVQRIFFYHFPHPTHHFLQTTLPILKHSLSLSLQHFFPFSSNLIVPPNPHHHVPYIRYLDGDSLSFTVAESAADFNLLISDSPQDVQNWHPLVPTLPSHLTEEDGTRVFPLMAIQITVLPNSGFSICLTFNHLAGDGKSLHHFIKYWASVSKATRSGDLSLTPLEGSLSLPFHDRNRVKDPKGLKLVYTRELLDSESEKMEFAGIVQDVYTNKVRATLVLSRERVEKLKKWTTLKCALGIQHVSTFVVTCSLIWVCMIKSEQSNVNCVDEHQLCYLVFLADCRGRPELSIPSTYFGNCLATCIVAIKRGELVGENGIVEVANAIQREVRDWKKDALRRTETLMSDYRELAKPGQCVVVVAGSPKLGVYETDFGWGKPKKSEAVHLDSSGSISLSDCRDKEGGSGIEPKKSEAVHLDSSRSISLSDCRDKEGGIEVGLAFERIQMSNFLNILEEQLNNIVAHE. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05521 499 Gene3D - 247 444 IPR023213 -
Seca4g05521 499 PANTHER - 4 439 - -
Seca4g05521 499 Gene3D - 3 241 IPR023213 -
Seca4g05521 499 Pfam Transferase family 14 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05521 Seca-Chr4 104269523 104271854 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05521 31 414 Monolignol Biosynthesis Gene Families AT5G48930 22.362 9.12e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05521 - - gmx:100797294 662.144