Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05519 ATGTCTCATCACAGCACAGTGAAGATCTTGGACCTGTGCCAAGTTGGTCCGCCACATGCCTCACTTCCCTCAACCACTTTTTCCCTCACTTTCTTTGACCTTCCATGGCTACACTGTCGCCCCGCCAAACGCATCTTCTTCTACGACTTTCCCCATCCCACACACCACTTCCTCCAAACAACACTTCCAATTCTCAAGCACTCTCTATCCCTCTCCCTCCAACACTTCTTCCCTTTCGCCGGCAATCTCATCATCCCTCCACAACCCCACCACCACGTCCCTTACATCCGCTACCTCCCCGGAGACTCTGTCTCCTTCACCGTCTCAGAGTCCACTGCAGACTTCAACCTCCTCATATCTGATTCACCCCAGGACGTTCGAAACTGGCACCCCCTTGTCCCTACATTGCCTTCACCTCGTACTGACGACGATGACACACGTGTTATCCCTCTCATGGCCATTCAGGTCACGATTCTACCATGCTATGGACTCAGCATCTGTGCCGCGTTCAGCCATGTTGCTGCTGATGGAAAATCACTTCACCATTTCATGAAGTATTGGGCCTCTGTTTGCAAGGCAAATTGGGATTTGACTCCCCTTGAAGGTTCTCTGTCTCTTCCTATCCATGATAGAGACAGAGTTAAAGACCCAAAGGGGCTTAAGCTTGTTTACTTACGGGAAAGCATGAAGTTTGAAGGCTTCGTACGAGATGTTTACACTAACAAGGTACGCGCCACTTTTGTGTTGAGTCATGAACGGGTTGAGAAAGTCAAGAAATGGATTTCTCTTAAATGTGCTAGCAGCTACGCTTCAGGGACACCGCACGTGTCTACCTTTGTGGTAACATGCTCCCTGGTTTGGGTTTGTATGGTAAAATCAGAACAGAGCAATGTTAATTGTGTTGCAAAAGGCTGTGATGAACTCTGTTACTTGGTCTTTGTAGCGGATTGTCGTGACAGTCCTGAATTTTCATTAACTTCAACGTACTTTGGGAATTGCTTGGCCTCTCTTATTCCGGCTGTGAAGAGGGGTGAGATAGTGGGAGAGAATGGGATCGTTGTGGCAGCAAATGCTATTGGAAGGAAGGTTAGAGATTTCAAGAGTGATGCTTTGGGAGGGGCTGAAACATTGATGTCAGATTTCAGAGAATTAGGAAAACCAGGTAAATCTGTATTAGTAGTTGCAGGGTCACCAAGACTGGGCGTGTATGAAACTGATTTTGGGTGGGGAAAGCCTAAGAAGTCTGAAGCAGTGCATCTTGATTCATCAGGATCAATTTCTCTTTCTGATTGTAGAGACAAAGACAGTAGAATTGAGTTTGGAATGGAGCATCAACCCAAAGTATATTTAACTATGACATCTTCTTCTAAAGATGACAAAAGCACTACCTGCTAA 1395 0.4645 MSHHSTVKILDLCQVGPPHASLPSTTFSLTFFDLPWLHCRPAKRIFFYDFPHPTHHFLQTTLPILKHSLSLSLQHFFPFAGNLIIPPQPHHHVPYIRYLPGDSVSFTVSESTADFNLLISDSPQDVRNWHPLVPTLPSPRTDDDDTRVIPLMAIQVTILPCYGLSICAAFSHVAADGKSLHHFMKYWASVCKANWDLTPLEGSLSLPIHDRDRVKDPKGLKLVYLRESMKFEGFVRDVYTNKVRATFVLSHERVEKVKKWISLKCASSYASGTPHVSTFVVTCSLVWVCMVKSEQSNVNCVAKGCDELCYLVFVADCRDSPEFSLTSTYFGNCLASLIPAVKRGEIVGENGIVVAANAIGRKVRDFKSDALGGAETLMSDFRELGKPGKSVLVVAGSPRLGVYETDFGWGKPKKSEAVHLDSSGSISLSDCRDKDSRIEFGMEHQPKVYLTMTSSSKDDKSTTC. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05519 464 Gene3D - 6 237 IPR023213 -
Seca4g05519 464 Gene3D - 238 454 IPR023213 -
Seca4g05519 464 PANTHER - 7 443 - -
Seca4g05519 464 Pfam Transferase family 18 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05519 Seca-Chr4 104254064 104258359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05519 64 412 Monolignol Biosynthesis Gene Families AT5G48930 24.054 8.51e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05519 - - gmx:100797294 622.083