Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05518 ATGGCTCATCACACTGTGAAGATCTTAGATCGATGCGAAGTCGTTCCACCACCAGGCTCAATTCCCTCAACCACTCTTCCCCTCACTTTCTTGGACATTTCATGGCTATACACAAAGCCCCCAGTGCAACGCATCTTCTTCTACCACTTTCCCCATCCCACCCACCACTTCCTCCAAACAGCACTTCCAATTCTCAAACACTCTCTTTCCCTCTCCCTCCAACACTTCTTCCCCTTCTCCTCCAATCTCATAATCCCCCCAGATCCCCAACACCATGCCCCTTACTTCCGCTACCTCCCTGGAGACTCTCTCTCCTTCACCGTCGCAGAGTCCACCGCAGACTTCAACCTCCTCGTATCTGACTCACCACAGGACGTTCGAAACTGGCACCCCCTTGTCCCTACCCTGCCTTCACCTCTTACAGAGGAAGATGGCACACGTGTGTCCCCTCTCATGGCCATTCAGGTCACTGTCCTACCAAACTCTGGATTCAGCATCTGCCTCAAGTTCCTCCATGTTGCTGGTGATGGCAAATCACTTCATCTTTTCCTGAAGTACTGGGCCTCTGTTTGCAAGGCAAGAGGTGATTTGGCTTCCCTTGAAGACCCTTTAACTCTTCCTTTCCATCAAAGGGAAAGAGTCAAAGATCCAAAGGAGCTTAAGCTTCTCTACTTACAACAACTTCAACATTCAGGAAGCATGGAAATAACAGACTTCATTCCAGATATTTTCAATAACAAGGTGCGCGCCAGTTTTGTGTTGAGTCGTGAACGAGTTAAGAAACTGAAGAAATGGATTTCTCTTAAATGTGCTAGCGACGCTTCAGGGACACCGCACGTGTCAACGTTTGTGGTCACGTGCTCCTTGATTTGGGTTTCTATGATTAAATCGGAACAGAGCAAAGGTGACTCTGTTGCGAAAGACTATGATCAACTCTGCCACTTGGTCTTTCTAGCAGATTGTCGTGAAAGTCCTGAATTGTCATTACCTTCAACGTACTTTGGGAATTGCTTAACCTCTCTTATTCCGGCTGTCAAGAGGGGTGAGCTTGTGGGAGAGAATGGGATCGTTGTGGCAGCAAATGCAATTGAAAGGAAGATTTGGGATTTCAAGGCTGATGCTTTGAAAGGGGCTGAATCATTGATGTCAGATTATATAGAATTATTCAAACCAGATCAATCTGTTGTTGTGATCGCGGGTTCACCAAAACTGGCAGTGTACGAGACTGATTTTGGATGGGGAAAGCCAAAGAAGTCTGAAGTGGTTCATCTTGATAGTATTGGAGGAATTTCTCTTTCTGATTGTAGGGACAAAGAAGGTGGAATTGAAGTTGGAATGGCACTTGGAAGAACTCAAATGGATAATTTCATCAACATCTTAGAAGAACACCTTGATAATATTGTAGTTTAA 1410 0.4574 MAHHTVKILDRCEVVPPPGSIPSTTLPLTFLDISWLYTKPPVQRIFFYHFPHPTHHFLQTALPILKHSLSLSLQHFFPFSSNLIIPPDPQHHAPYFRYLPGDSLSFTVAESTADFNLLVSDSPQDVRNWHPLVPTLPSPLTEEDGTRVSPLMAIQVTVLPNSGFSICLKFLHVAGDGKSLHLFLKYWASVCKARGDLASLEDPLTLPFHQRERVKDPKELKLLYLQQLQHSGSMEITDFIPDIFNNKVRASFVLSRERVKKLKKWISLKCASDASGTPHVSTFVVTCSLIWVSMIKSEQSKGDSVAKDYDQLCHLVFLADCRESPELSLPSTYFGNCLTSLIPAVKRGELVGENGIVVAANAIERKIWDFKADALKGAESLMSDYIELFKPDQSVVVIAGSPKLAVYETDFGWGKPKKSEVVHLDSIGGISLSDCRDKEGGIEVGMALGRTQMDNFINILEEHLDNIVV. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05518 469 Gene3D - 244 467 IPR023213 -
Seca4g05518 469 Pfam Transferase family 13 457 - -
Seca4g05518 469 PANTHER - 6 465 - -
Seca4g05518 469 Gene3D - 5 239 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05518 Seca-Chr4 104214034 104215443 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05518 22 416 Monolignol Biosynthesis Gene Families AT5G48930 24.105 6.13e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05518 - - gmx:100797294 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05518 4 104214034 104215443 Seca4g05518 4 104214034 104215443 ECH