Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05507 ATGGCGGAGCCTACAATGCATAAGCTTGTTGAGCAATGTCAGATCAGTCCCACAACAACAAGAACCATGTCCCTTCCCCTCACATTCCTTGACTTGCCTCTAGCAGGTCCTATTTATGTCAAACGCCAATTCTTCTACCAGTTTCAATATCCCACCCACCATTTCTATGAAACGACACTCCCCACTCTCAAACACTCTCTCTCTCTCACCCTTCAATATTTCTTCCCTCTCGCCGGAAACCTCATCTGTCCGCCACCACCTCAAAAGCCCTTCATTCGCTGCACCGATGATGACTCTGTCAATTTTACCATCATCGAGTCCGCATCGGATTTCAACCATCTCTCAGCCAACCATCCCAAAAGTCTCAAAGAGTTTAATCACTTGGTTCCTAAATTGACATACACAATGGTAGATGATGATGACACGTTCATCTTCCCACTTGCGTCCTTGCAAGCCTCGATTTTCCCTAATCTTGGCCTTTGCATTGCAATCACGTATTGCCACGTGATGGATGCAAGTTGTTGCAGTCATTTCATGAAGACTTGGTCTTCCATTTGTCGAACCGGTGGAGTTGACCTCACACCACCACCACCACCACCGTGCTTTGATAGAGAAGTGCTGAAGGACCATAACGGACTCGAGGCTATTTTCTTAAGGGGCTATTTTGAAGAGAGGTCAACTTGGAAGGAAAGACTCGTTGACGATGACGACGAAGACGACTTTGTTAAGGCAACCGTTGTTTTTGGTAGAGATGATATTGAGGGGATGAAAAGATTGGTACTGAACGAGTGGAGGAAAAACGACGAATTCAGTTACGCGCCGCAATATCTATCGAAATTTGTGGTGACGTGTGCTTTCGTGTGGGCTAGTTTGGTTAAAACAAGATATAGAAACGATGATGATCAACAAGAAGAATCAGATCATGTCAAAGAGGAGTACTTTCGTTTTGCAGCGGATTGTAGAGATCGTCTTGAGTATCCAATACCAGCGACGTATTTTGGAAACTGCTTAACGCTTTGTCATGGAATCCTCACGAGAAAGGACCTTAAGGGAGAAGGTGGTTTTGTGAAAGCGGTTAAGGTAATTGAAAAGGCAGTAACTGAAATGAAAAATGAGCCGTTTAAAGATGCAGACGAGTGGAGGGCTTCGTTTAAGAAGATGTTTGTGTTGGGAAGTGTGTTGTTGGTTACAGGGTCGCCCAAGTTCACTGTTTATGAGACTGACTTTGGATTTGGAAGACCTACCAAAGTCGAGATGGTACATGGCTTTAAGTGTATGTCTCTGGCTGAAAGTGGAGACAAGGAGGGAGGACTTGAGGTTGGCATGGTACTTAGAAACAACGAGTTTGGTTACTTCAGCTCTTTCATGGAACAAGTGCTCAAGGCTTTAAAATCCTAA 1398 0.4456 MAEPTMHKLVEQCQISPTTTRTMSLPLTFLDLPLAGPIYVKRQFFYQFQYPTHHFYETTLPTLKHSLSLTLQYFFPLAGNLICPPPPQKPFIRCTDDDSVNFTIIESASDFNHLSANHPKSLKEFNHLVPKLTYTMVDDDDTFIFPLASLQASIFPNLGLCIAITYCHVMDASCCSHFMKTWSSICRTGGVDLTPPPPPPCFDREVLKDHNGLEAIFLRGYFEERSTWKERLVDDDDEDDFVKATVVFGRDDIEGMKRLVLNEWRKNDEFSYAPQYLSKFVVTCAFVWASLVKTRYRNDDDQQEESDHVKEEYFRFAADCRDRLEYPIPATYFGNCLTLCHGILTRKDLKGEGGFVKAVKVIEKAVTEMKNEPFKDADEWRASFKKMFVLGSVLLVTGSPKFTVYETDFGFGRPTKVEMVHGFKCMSLAESGDKEGGLEVGMVLRNNEFGYFSSFMEQVLKALKS. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05507 465 Gene3D - 238 463 IPR023213 -
Seca4g05507 465 PANTHER - 8 461 - -
Seca4g05507 465 Pfam Transferase family 19 457 - -
Seca4g05507 465 Gene3D - 7 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05507 Seca-Chr4 104136726 104138123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05507 47 459 Monolignol Biosynthesis Gene Families AT5G48930 23.303 2.90e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05507 - - gmx:100813271 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05507 4 104136726 104138123 Seca4g05507 4 104136726 104138123 ECH