Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05506 ATGGGAAGAGCACCTTGCTGTGACAAGAATGGACTTAAAAAAGGTCCATGGACACCTGAGGAAGATCTCTTGCTCATCAACTACATTCAAACTCATGGACCTGGAAATTGGCGAAACCTCCCCAAGAATGCTGGTTTGCAAAGATGTGGTAAGAGTTGCCGCCTTCGTTGGACAAACTACTTGAGGCCTGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATTCAGTTGCACAGTGTATTGGGAAACAAGTGGTCGGCTATAGCGGCTCGGTTACCAGGGAGAACTGACAATGAAATAAAGAACTATTGGAACACTCACATTAGGAAGAGGCTGCTTCGAATGGGAATTGACCCTGTTACTCACGCTCCACGCCTTGATCTACTTGACATGTCTTCAATTCTCAGGTCAGCGTTAGGGAACCCATCGATTCTGAATCTGCAAGGTTTGTTGGGTGCTCAAGCGTTGGTGAATCCAGAGTTGTTAAAACTAGCTGCCACTGCAACTCTGTTATCTCTGAAGAATGAGAACACAAATTTGGTTTCACAGAATCTACAACAAATCAATGCTGGGAATTGTCAATTACAGAGCCAAGTTGTCCCACCAGAGTTTACAAGTCAGTTTCAAACACAACCTCAAAGCAACAACGTGAATGGCTTATCAGGAAACATGGTCAACATGAGCTGTTCAAGTTCCCCAGAGAATTTGATTTCTCAACAATACCAACAAGGTGATTTGTTACAGAACGCGGAATTGGTACATTGCTTAAACGATGTGAACCAAAACATGAGCTATGAATCAGTTTTGTCTACGCCTTTATCAACACCAACACGGTTAAATTCGTCATCGACCTATGTGAATAGCAGCACAGAGGAAGAGAGGGACACATTTTGCAGCGACTTATTCAAGTTTGAAATTCCAGAGAGTCTGGATATCAGTGACTTCTTGTAA 963 0.4289 MGRAPCCDKNGLKKGPWTPEEDLLLINYIQTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSALGNPSILNLQGLLGAQALVNPELLKLAATATLLSLKNENTNLVSQNLQQINAGNCQLQSQVVPPEFTSQFQTQPQSNNVNGLSGNMVNMSCSSSPENLISQQYQQGDLLQNAELVHCLNDVNQNMSYESVLSTPLSTPTRLNSSSTYVNSSTEEERDTFCSDLFKFEIPESLDISDFL. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05506 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca4g05506 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca4g05506 320 CDD SANT 69 112 IPR001005 -
Seca4g05506 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g05506 320 CDD SANT 16 61 IPR001005 -
Seca4g05506 320 FunFam Transcription factor MYB39 69 130 - -
Seca4g05506 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 265 - -
Seca4g05506 320 Gene3D - 13 66 - -
Seca4g05506 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05506 320 Gene3D - 69 116 - -
Seca4g05506 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05506 320 FunFam MYB-related transcription factor 13 66 - -
Seca4g05506 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05506 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g05506 320 SMART sant 13 63 IPR001005 -
Seca4g05506 320 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05506 Seca-Chr4 104095889 104097041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05506 1 320 MYB Transcription Factor Family AT4G21440 50.000 3.14e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05506 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05506 K09422 - gmx:102668351 468.774