Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05502 ATGGGTGGGGTAATTCTCCTTATGGGGTCTAAGTTTTCTAGAGGAATAGGTCACTACCCTATTTTCTTGCATCAAAACACAACCCAATCCCTTCCTAGAACCATCATTGTAAACCTCGAAGGGCTTTTAAGGATTAGGATTCCAGTTGCAGTGAAGACTCTTAACATTAAAGGAAATCAGGGCCACGAAGAATGGGTGGGAGGCTTTGGTGTTGTATACAAAGGTTGGATCAATCATAGTGGGTGCTCCCCATCAAGACATGGAGTCGGGATTCCAGTTGCAGTTTACACTCTTAACATAGAAGGAAATCAGGGCCACAAAGAATGGGTGGTATGGCAGGTTGATGTTAGCAATCTATATGCCCTTGAACACCCCACCCTTGTAAAATTGGTTGGACATTGCATTGAAGGGGATAACATGGTTCTGGTATATGAGTTCATGCCTAGAGGAAGTTTAGAAAAGTAA 465 0.4301 MGGVILLMGSKFSRGIGHYPIFLHQNTTQSLPRTIIVNLEGLLRIRIPVAVKTLNIKGNQGHEEWVGGFGVVYKGWINHSGCSPSRHGVGIPVAVYTLNIEGNQGHKEWVVWQVDVSNLYALEHPTLVKLVGHCIEGDNMVLVYEFMPRGSLEK. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05502 154 Gene3D Phosphorylase Kinase; domain 1 66 147 - -
Seca4g05502 154 Pfam Protein tyrosine and serine/threonine kinase 67 153 IPR001245 GO:0004672|GO:0006468
Seca4g05502 154 PANTHER OS01G0588500 PROTEIN-RELATED 67 154 - -
Seca4g05502 154 SUPERFAMILY Protein kinase-like (PK-like) 67 153 IPR011009 -
Seca4g05502 154 ProSiteProfiles Protein kinase domain profile. 58 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05502 Seca-Chr4 104005160 104009801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05502 66 153 Receptor kinase-like Gene Family AT5G39000 45.455 6.90e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g05502 PK_Tyr_Ser-Thr 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05502 - - mnt:112095001 112.849