Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05494 ATGGTGAGAACCCCTTCTTCTGACAAAAATGGACTAAAGAAAGGAACCTGGAGACCAGAAGAGGATAGGAAGTTAATGGCTTATGTCACTAAGTATGGCTGCTGGAATTGGAGCCAAATCCCAAGATTTGCGGGTCTGGCAAGGTGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTATCTCAGGCCCAACATAAAAAGAGGGAACTACACTCGAGAAGAAGAAGACACTATTATCAGACTGCACAATAAGTTGGGTAACAGATGGTCTGTCATTGCTACTCATTTACCAGGAAGAACAGATAACCAAATAAAGAACCACTGGCACACCACTCTCAAGAGGCGTTTTGGAAAGAACTCAGTGACAAATGAGATTAATGTTGAAGCCATAACAACTAAATCAAATGATTCTGGGACCAAGCAAGACAGGGACTTGGTTCAGAACAATGGTAATTCCTTCCACATTGGTTCAATGAGCACTTCCAACGCCTCTGATAGTAGCACTTTGTCCCCACAATTTTCCATGACCGAATTCTCCTCCATACCCTCAGATTATACCTCAGCTGCCACTAATAAAAATGTGTTAATGGATAATGACTTTGATTTTCTTGATGCATGCACGGAGGCTATGAACGAGAATTTCTGGACAGAGACATATCTACCTGACATTTGCTACACCCCAATTAAGATAGTGTCAGATATTGCTATTAATGGTAGTACAAATCAAGGTTCAGATCATGTAGAGACTCTGGATGGTTGGGCATTGTTTTCCCAATCACTGTGTAGTGAAAGTTTGGCTGTGGAGAATGATCACCCTGCCTTTCTAGAGACAATGCAACCAATAACTGAAAACTTTTGGACAGAGCCGTGTGTGACTGATATGTCCCACGTTTCAAATGAAATTGATTGCACCTTTGGTGACTCAGTCCAATGA 933 0.4191 MVRTPSSDKNGLKKGTWRPEEDRKLMAYVTKYGCWNWSQIPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTREEEDTIIRLHNKLGNRWSVIATHLPGRTDNQIKNHWHTTLKRRFGKNSVTNEINVEAITTKSNDSGTKQDRDLVQNNGNSFHIGSMSTSNASDSSTLSPQFSMTEFSSIPSDYTSAATNKNVLMDNDFDFLDACTEAMNENFWTETYLPDICYTPIKIVSDIAINGSTNQGSDHVETLDGWALFSQSLCSESLAVENDHPAFLETMQPITENFWTEPCVTDMSHVSNEIDCTFGDSVQ. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05494 310 CDD SANT 69 112 IPR001005 -
Seca4g05494 310 Gene3D - 13 66 - -
Seca4g05494 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g05494 310 CDD SANT 16 61 IPR001005 -
Seca4g05494 310 MobiDBLite consensus disorder prediction 132 169 - -
Seca4g05494 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Seca4g05494 310 FunFam MYB-related transcription factor 13 66 - -
Seca4g05494 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05494 310 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g05494 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05494 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05494 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g05494 310 Gene3D - 69 144 - -
Seca4g05494 310 SMART sant 66 114 IPR001005 -
Seca4g05494 310 SMART sant 13 63 IPR001005 -
Seca4g05494 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05494 Seca-Chr4 103775254 103779508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05494 1 130 MYB Transcription Factor Family AT5G65230 58.647 6.51e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05494 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05494 K09422 - gmx:100811124 322.398