Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05488 ATGGTGAGAGCCCCTTGTTGTGACAAAAATGGACTGAGAAAAGGCGCGTGGACACCCGAGGAAGACAGCAAGTTGATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGGTTGATTTTCATTTCAGGTCTTGCAAGGTGTGGGAAGAGTTGTAGACTGAGGTGGCTCAATTATCTAAGGCCCGGCGTCAAAAGAGGTAACTTTACTCAAGAAGAAGAAGAGATTATTATCAGACTTCATGGAAAGCTGGGTAATAAATGGTCTTCGATTGCTACTCATTTGCCCGGGAGAACGGATAACGAGATAAAGAATCACTGGCACACCGCTCTGAAGAAGCGTTTTGAGCAGAACAAGTCAGACACTAGAGTTGGAACTGAAAAGGCCAAAGACTCAAAGTCAAATAAGAATGACTCATCAATGGAAGAAGCCAATAAGCGACTTGAGAGTGTGTCGGCAGAGAACAGCAGTGTGGGTCCTGATACTTGTCCGTTTTCTCCTCAACCATCGTCTAGTGGATTCTCCTGTGTAACAACAGACACTACTCTGGCAGCTGCCACAAACAATAAAAACTTGGTTCTAGAAGAGGATGACTTTCCTTTTCTGGATGTTTACACGGAGGCCGTTAGTGAAAATTTCTGGACAGAACCATTTCTGACTGACAGCTCCTATTATCCTCCGAGTGAAGCAACTGTGGCCGTGGGGTGTGAAAATGAATACTTTAGTCCCGTGTGCGATGTAGAGCTTTGGAGCCATAATAATAATAATAATTTGTACGAGGAATATGGGGGTTTATTCTATTAA 825 0.4436 MVRAPCCDKNGLRKGAWTPEEDSKLIAYVTRYGCWNWRLLPKFAGLIFISGLARCGKSCRLRWLNYLRPGVKRGNFTQEEEEIIIRLHGKLGNKWSSIATHLPGRTDNEIKNHWHTALKKRFEQNKSDTRVGTEKAKDSKSNKNDSSMEEANKRLESVSAENSSVGPDTCPFSPQPSSSGFSCVTTDTTLAAATNNKNLVLEEDDFPFLDVYTEAVSENFWTEPFLTDSSYYPPSEATVAVGCENEYFSPVCDVELWSHNNNNNLYEEYGGLFY. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05488 274 Gene3D - 74 153 - -
Seca4g05488 274 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
Seca4g05488 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca4g05488 274 MobiDBLite consensus disorder prediction 125 156 - -
Seca4g05488 274 MobiDBLite consensus disorder prediction 157 173 - -
Seca4g05488 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca4g05488 274 MobiDBLite consensus disorder prediction 125 173 - -
Seca4g05488 274 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Seca4g05488 274 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca4g05488 274 CDD SANT 16 67 IPR001005 -
Seca4g05488 274 SMART sant 13 69 IPR001005 -
Seca4g05488 274 SMART sant 72 120 IPR001005 -
Seca4g05488 274 FunFam MYB-related transcription factor 13 72 - -
Seca4g05488 274 CDD SANT 75 116 IPR001005 -
Seca4g05488 274 SUPERFAMILY Homeodomain-like 11 114 IPR009057 -
Seca4g05488 274 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca4g05488 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 189 - -
Seca4g05488 274 Gene3D - 14 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05488 Seca-Chr4 103694055 103696133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05488 1 230 MYB Transcription Factor Family AT2G31180 43.913 8.04e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05488 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05488 K09422 - gmx:100778518 269.626