Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05482 ATGAAGAACTGTGAGCTATGCAAGGTTCCGGCGAGGACCTTCTGCGAGTCTGACCAGGCAAGCTTATGCTGGAACTGCGACTCAAAGGTCCATGGAGCCAACTTCTTGGTGGCTAGGCACACCAGGACCCTTCTGTGCCACGCGTGTCAGTCCCTCACGCCGTGGAAGGCCTCTGGCTCTAGGCTTGGAAATACTCTTTCCTTGTGCGACACGTGCGCCGGCGGAAACAAGGTCGACGGCGAACAAGGGGAAGAAAGCGAAGGAGGCAATGACGAAGACATAGACACCACCGACTATGAAGACGAAGACGAAGACGAAGACGATGACGATGACGAGGAGGAGGTTGCTGGTGACGAGGACGGTGATAACCAGGTAGTCCCTTGGTCCTCGACGACGCAGCCGCCGGCTCCGAGCTCATCCAGCAGCGAAGAGTCGGTTAGCAGGTGCAACAATGGCGATGAGGGGGTTTCCCAGTCAATGACATCAATTTCGTCGAAACGACGTCGTGAGGATCATGATTTTCAGGTTTACATTAAAGATTCGAATAATTGGGCATATCAACGAAGGTACGGTGCGAAGTGGAGAGATGAAGTTGGTTGGTTAGGGTGCGACGGGGAACCGCCGTCGAAGGTGTCGATGCGATCCTCCTTAAGCGACGGAGAGACTAGACCGCCGTCACCATACGGTTGCTGTAATAGTAGAGCCTCCGAAGACGTTTGA 720 0.5444 MKNCELCKVPARTFCESDQASLCWNCDSKVHGANFLVARHTRTLLCHACQSLTPWKASGSRLGNTLSLCDTCAGGNKVDGEQGEESEGGNDEDIDTTDYEDEDEDEDDDDDEEEVAGDEDGDNQVVPWSSTTQPPAPSSSSSEESVSRCNNGDEGVSQSMTSISSKRRREDHDFQVYIKDSNNWAYQRRYGAKWRDEVGWLGCDGEPPSKVSMRSSLSDGETRPPSPYGCCNSRASEDV. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05482 239 MobiDBLite consensus disorder prediction 198 239 - -
Seca4g05482 239 CDD Bbox1_BBX-like 4 45 - -
Seca4g05482 239 MobiDBLite consensus disorder prediction 85 120 - -
Seca4g05482 239 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca4g05482 239 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 178 - -
Seca4g05482 239 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Seca4g05482 239 MobiDBLite consensus disorder prediction 124 163 - -
Seca4g05482 239 MobiDBLite consensus disorder prediction 77 174 - -
Seca4g05482 239 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05482 Seca-Chr4 103402617 103403791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05482 2 135 C2C2-CO-like Transcription Factor Family AT4G27310 45.963 1.45e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g05482 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05482 - - gmx:100809520 228.024