Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05479 ATGGTTAATGATGATCAAAGGGACAACAATCATCAAGTAAAAATGAGGACTGGTGTTCTGTTCTCCCTGCTCTGTTGGCTGCTATGTTCCCAACTATGTTCAGCTGGAGATACATTGAAATCTGGCAAGAATATAACACAGTACTCGGAAAACCTTGTCTCAGCTGGAAACAAATTTGAACTGGGCTTCTTTTCTTTACCTATTGGAAGTGATAGCACGAGTGCAAAAAAGTATTTGGGGATATGGTATCACAACTTGGAACCACAAACAGTGGTATGGGTTGCCAACAGAGACAGGCCAGTTGAAGGTTCCAGTGGAGTTTTTCAAATTGCAGAGGATGGAAATGTCGTAGTAGCAGATGCATCGCAAAACTACTGGTCCTCTGGACTTGAAGAGTCCTCATCCAGAAACAGGACAGTGAAGCTCTTGGATTCTGGGAATCTAGTGCTAATGGATGATGATCACTCTGGAATGAGTTATCTGTGGCAGAGCTTCCTTCATCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAATGCGACATTGACTTCTTGGAAAAACGACAATGACCCGGGAACTGGGAGCTTCACCTTTAGGCTGGCTCGAAAAAGGTGGCAATACAGAGTATATAACAACTCACAACTTTACTTGGAATTGGATGGAATCAATTCAGAAGCGATGTCCCCGTTGGTGATTGGCTTGTTGGCCAACACCACCTTAAATACGTCAATATCTTACAAATCTTCAGGCAAAAGGATCAACTTTCAATCGCAACCTTATAATTATGAGAAATCAAGGCTGTTAATGAATTCCACAGGGGAGATACAGTTTTTGAAATGGGCAGATATACAATGGGATATGCTGTGGCGGATGCCAGAGGATGAATGTAACATACATAACTATTGCGGGAATTTTAGCAGCTGCAACAAAAATAATGATTGGAGACGCTGCAAATGTTTACCAGGCTTCAGTCCTAGGGTGATTAATAATCCGCGCCAAGGGTGTTTGAGAAAATCTAGGCCGTGTAGCTACAATGACAAGATGTTCCTCAACTTAACCAAGATTAAAGCGGGTAGCCCAGACCTAACAATCACAAAACAAACTGAAGAAGACTGCAAATCTTTATGCCTTAACTTCTGTTCCACATCCGAGTGCCAGGCTTATTCGTATTATTATTCGTCTGTGTTTGACCGTACTTTAGAAGCGGGTACATGCGAGATCTGGGCACGGGATTTACCTACACTTCAAGAGCAGCAAGATAGTGGTCGTGATGTTTCTATCTTAGTTAAAACTTCAGATATAGTGTCAACTGCAAAATCGTGTAAACCTTGTGGCACATACATAATTCCTTATCCGCTAAGCACTGGCCTAAACTGTGGAGACCACATGTACAACAAGTTCAGTTGCTCGGAAGGGGAGGTTATGTTCAACATGTCCGGAGGGAAATTATACAGAGTTACTTGGATTGATGAAGCTGCCAGAAGATTTTTCATCCAAACGAATGATTCAGCTTCAGATCGCTGCGATTCCAGTTCCAGCTATCAAAATGATGAGGCTAGTCCTCCATTTAATGTGATTAACTGGTGCTTCAGAGAAGATGAAATAGAGGTCCATTGGCTACCAGCACCAGAACCGCTCTGTAATAAGTCTGTAGACTGCAAGAATTGGCCTCATTCAACATGCAATGCAACAAGTGGAGGAGAAAGCAGGTGCTTTTGCAATTCAAATTATCAGTGGAATGCCTCGAGTTTAAGATGTACCCGAGTAATTATTCAACCATCAAGAAACCATCCAAGTGATCCAACCAACCGACTGCCATTGATTCTGACAGTAATTCTTACGGGCACGATTATCCTAGCATGCACAATAGCATTTGCTTATTTGCGGAGAAAGAAAATAGCCCAAAAGCTTGATAGGGAAAGCATTCAAACTCAGGAGGGCTTTTATGGTAGTGGAAGACATGTGAAAAGTTTGATTGACTTAGGAATTTTAGAAGATAAAGACAGTGAAGGCATTGAAGTACCATATTATACTTTTGGAAGCATTCTAGCAGCTACAGATAATTTCTCAAATTCAAACAAGCTTGGACAAGGAGGTTATGGGCCTGTATATAAGGGAACGTTTCCTGGAGGACAGGAAATGGCTATAAAGAGGCTTTCAAGTGTTTCAACTCAAGGCCTACAGGAATTCAAAAATGAGGTTGTTTCAATTGCCAAACTTCAACATCGGAACCTTGTTAGACTTAGGGGCTATTGCATCAAAGGAGATGAAAAAATCTTACTGTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGGTTAG 2337 0.4151 MVNDDQRDNNHQVKMRTGVLFSLLCWLLCSQLCSAGDTLKSGKNITQYSENLVSAGNKFELGFFSLPIGSDSTSAKKYLGIWYHNLEPQTVVWVANRDRPVEGSSGVFQIAEDGNVVVADASQNYWSSGLEESSSRNRTVKLLDSGNLVLMDDDHSGMSYLWQSFLHPTDTFLPGMKMDANATLTSWKNDNDPGTGSFTFRLARKRWQYRVYNNSQLYLELDGINSEAMSPLVIGLLANTTLNTSISYKSSGKRINFQSQPYNYEKSRLLMNSTGEIQFLKWADIQWDMLWRMPEDECNIHNYCGNFSSCNKNNDWRRCKCLPGFSPRVINNPRQGCLRKSRPCSYNDKMFLNLTKIKAGSPDLTITKQTEEDCKSLCLNFCSTSECQAYSYYYSSVFDRTLEAGTCEIWARDLPTLQEQQDSGRDVSILVKTSDIVSTAKSCKPCGTYIIPYPLSTGLNCGDHMYNKFSCSEGEVMFNMSGGKLYRVTWIDEAARRFFIQTNDSASDRCDSSSSYQNDEASPPFNVINWCFREDEIEVHWLPAPEPLCNKSVDCKNWPHSTCNATSGGESRCFCNSNYQWNASSLRCTRVIIQPSRNHPSDPTNRLPLILTVILTGTIILACTIAFAYLRRKKIAQKLDRESIQTQEGFYGSGRHVKSLIDLGILEDKDSEGIEVPYYTFGSILAATDNFSNSNKLGQGGYGPVYKGTFPGGQEMAIKRLSSVSTQGLQEFKNEVVSIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFG. 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05479 778 ProSiteProfiles PAN/Apple domain profile. 344 434 IPR003609 -
Seca4g05479 778 PIRSF SRK 540 778 IPR024171 GO:0004674
Seca4g05479 778 PIRSF SRK 10 457 IPR024171 GO:0004674
Seca4g05479 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 91 193 IPR036426 -
Seca4g05479 778 CDD B_lectin 52 168 IPR001480 -
Seca4g05479 778 ProSiteProfiles Bulb-type lectin domain profile. 30 163 IPR001480 -
Seca4g05479 778 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 776 - -
Seca4g05479 778 CDD EGF 297 326 - -
Seca4g05479 778 Pfam Protein tyrosine and serine/threonine kinase 694 776 IPR001245 GO:0004672|GO:0006468
Seca4g05479 778 ProSiteProfiles EGF-like domain profile. 294 331 IPR000742 -
Seca4g05479 778 Pfam D-mannose binding lectin 90 186 IPR001480 -
Seca4g05479 778 SUPERFAMILY Protein kinase-like (PK-like) 675 777 IPR011009 -
Seca4g05479 778 Gene3D - 30 166 IPR036426 -
Seca4g05479 778 Pfam S-locus glycoprotein domain 262 328 IPR000858 GO:0048544
Seca4g05479 778 SMART blect_4 43 168 IPR001480 -
Seca4g05479 778 ProSiteProfiles Protein kinase domain profile. 691 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05479 778 FunFam Receptor-like serine/threonine-protein kinase SD1-8 31 165 - -
Seca4g05479 778 Gene3D Phosphorylase Kinase; domain 1 666 766 - -
Seca4g05479 778 SMART ntp_6 346 433 IPR003609 -
Seca4g05479 778 Pfam PAN-like domain 344 414 IPR003609 -
Seca4g05479 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 656 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05479 Seca-Chr4 103280358 103285063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05479 679 777 Receptor kinase-like Gene Family AT4G23320 67.677 4.46e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05479 B_lectin 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05479 - - gmx:100807185 837.795