Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05474 ATGTTAGCAAAAGCCCATAATAAAGGGGATGGATCTAAGTCCCTGTCTAAGATACTGGCAAGATGGAAAGAATATAATGCCCAGCTGGATTCCTCCAATGATGCGGATAAGCCGGTTCGAAAAGTTCCTGCCAAGGGATCGAAGAAGGGGTGCATGAAAGGGAAAGGAGGGCCTGAAAACTCGCGATGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGGAAATGGGTTGCTGAAATCCGAGAGCCAAACAGAGGGAATAGACTCTGGCTAGTTTCTCTGAGGAATCTTCAAAAGATTCTACAGTTGCAAATCACTCTGGCTCCTCAATGGCTGTATCAGCAATTACAGAGTCCATGA 360 0.4611 MLAKAHNKGDGSKSLSKILARWKEYNAQLDSSNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLVSLRNLQKILQLQITLAPQWLYQQLQSP. 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05474 119 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 91 - -
Seca4g05474 119 ProSiteProfiles AP2/ERF domain profile. 64 91 IPR001471 GO:0003700|GO:0006355
Seca4g05474 119 MobiDBLite consensus disorder prediction 31 63 - -
Seca4g05474 119 CDD AP2 63 91 IPR001471 GO:0003700|GO:0006355
Seca4g05474 119 Pfam AP2 domain 63 90 IPR001471 GO:0003700|GO:0006355
Seca4g05474 119 Gene3D AP2/ERF domain 64 96 IPR036955 GO:0003700|GO:0006355
Seca4g05474 119 SUPERFAMILY DNA-binding domain 64 91 IPR016177 GO:0003677
Seca4g05474 119 SMART rav1_2 64 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05474 Seca-Chr4 103172936 103174852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05474 8 94 AP2-EREBP Transcription Factor Family AT2G40350 58.242 2.68e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g05474 AP2 2.3e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05474 - K09286 gmx:100499747 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05474 4 103172936 103174852 Seca4g05474 4 103172936 103174852 PCT