Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05469 ATGAAAGCTGAGCTAAAGGGAACGTCCATTTCCTTTCAAAACCCTACACTTTTTAACACACCCCATAATCCTCTTTCAGGAGCACTTAAAGGGTGTCTTGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTTTTACTCCACTGTGCAAGTGCTCTGGAGAGCAATGATGTCACCTTGGCTCAACAAGTCATGTGGGTGCTCAATAACGTTGCTTCACCTGTTGGTGACACTAACCAAAGGCTCACCTCATGGTTCCTAAGGGCACTAATCTCTAGAGCTTCAAGAATTTGCCCTGCTGCCATGAATTTCAAGGGAAGCAATACCATTCAGAGGAGGTTGATGACTGTGACAGAGCTAGCAGGGTATGTTGATTTAATCCCTTGGCATAGATTTGGATTTTGTGTATCCAATAATGAGATTTTTAAAGCAACTATGGGGTTCCAAAAGGTACATGTTCTAGATTTTAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGGCCTGAAGGACCTCCTTCACTTAGAATCACTGTGCCATCTTTTAGGCCACCAGTCCCTCCTTTAGTCAATATATCAATACATGAGGTTGGTCTACGTTTAGGTAATTTTGCCAAGTTCAGGGATGTCCCTTTTGAGTTCAATGTTATTGGAAACACAGCTCAATTAGCATCTTCAGAATTGAGCAATGAAACAACAAGCTTTCATTTTGAATCTCTGTTAAGTCTCTTGAATCCTACTATGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGTTATTTGTCTGATGAAAGAAAGGGAAGTCACCAAAACCTTTCCCTTAGGGATGCTTTTCTGAGTCTAGTAAAAGGCCTTAACCCCCAGATTGTGCTTTTGGTTGATGAGGATTGTGATCTTAGTGCATCCAGTCTCACATCAAGAATTACCTCTTGTTTCAACCATCTATGGATACCCTTTGATGCATTGGACACTTTTTTGCCTAAGGATAGTTGTCAAAGGACAGAGTTTGAATCAGACATAGGACAGAAAATTGAGAACATCATAAGCTTTGAAGGGCATCAAAGGATAGAGAGATTGGAGTCCGGGATGCAAATGTCCCAAAGAATGAAAAATGTAGGTTACTTTAGTCTTCCATTTTGTGATGAAACTGTTAGAGAAGTTAAAGATTTGCTAGGTGAACATGCTAGTGGATGGGGGATGAAAAGGGAAGAAGGTATGTTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTTGTGACAGCTTGGGTCCCCAGTGAAATGAGGGATCATCATATTGGTATGGACGCAAGTTTGTCTTAA 1356 0.4086 MKAELKGTSISFQNPTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPAAMNFKGSNTIQRRLMTVTELAGYVDLIPWHRFGFCVSNNEIFKATMGFQKVHVLDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPPVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTAQLASSELSNETTSFHFESLLSLLNPTMLNLREDEALVINCQNWLRYLSDERKGSHQNLSLRDAFLSLVKGLNPQIVLLVDEDCDLSASSLTSRITSCFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNVGYFSLPFCDETVREVKDLLGEHASGWGMKREEGMLVLTWKGNSCVFVTAWVPSEMRDHHIGMDASLS. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05469 451 Pfam GRAS domain family 42 434 IPR005202 -
Seca4g05469 451 ProSiteProfiles GRAS family profile. 32 435 IPR005202 -
Seca4g05469 451 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 430 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05469 Seca-Chr4 102963390 102964745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05469 8 436 GRAS Transcription Factor Family AT3G49950 43.836 2.06e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g05469 GRAS 5.8e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05469 - - gmx:100802093 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05469 4 102963390 102964745 Seca4g05469 4 102963390 102964745 ECH