Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05465 ATGGACCCCAATTTTCAGCCCATGTTTTCCGGCGACGCTTCCACCTTCGACCCCATGTTTTCCGGCCTCAGCCTCCAATCCCTTCTCACTCTCAATCCCTCTGTCTTCGCTGACGGTTTCCCCACATTGGCCTCTCTCACCGAAGATCCTTCTCCACAGAACCTTCCAGAACCCACCGACAAGAAGCTCCTCGTTCCAAAAACCGAGCACCCCCATTTCCCCATGGAACATCAACAACAACAACTACTCATTTCCCACCACCACTCTCCTCAACCCTTCAACTTCTTCCCCAAATACCAACCCTTCCACCGTCTCCCTCATCTCCGTTCTCCGGAGTCACCACCGCAGAAGCGCCTCCGCCCTCATCTCACGGCGGATACTACTCCCCCTCCCCCTCCTTCCGCGGCGGTTCGCGGAAAAGCACCGTCAGTGATTCCTCAGAGCAACCTGGCAAGGCAGAGAAGGCAAAAGCTGAGCGAGAAGACACGGTGCTTGCAGAAGCTGATGCCATGGGACAAGAAAATGGACCAAGCCACCCTTCTAGAAGAAGCTTACAAATACGTCAAATTCTTGCAGGCACAGTTCTGTGTTCTCCAATCCATGCCTTCCCAAACTAACCCTTACCTCGCCACCATCCATAACAACACCAACAACAATGGTGGGAATGTTTTCGGTGAGTTGGAGAGGCTGAATCGGAGCCAGGTGTTGCAGGTTCTGGTGAACTCCCCAGTGGCTCAAACCATGCTTTATTCACAAGGGTTCTGTGTTTTCTCGATGGAACAGTTGGCATTGCTCAGAAAATTATCAGAGAAGAGGCAGCAACAGCAACAACAACAACAAATGTCTCATCATGCTTCTTCCAAAACTTTCTTCAACTGA 879 0.5154 MDPNFQPMFSGDASTFDPMFSGLSLQSLLTLNPSVFADGFPTLASLTEDPSPQNLPEPTDKKLLVPKTEHPHFPMEHQQQQLLISHHHSPQPFNFFPKYQPFHRLPHLRSPESPPQKRLRPHLTADTTPPPPPSAAVRGKAPSVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFCVLQSMPSQTNPYLATIHNNTNNNGGNVFGELERLNRSQVLQVLVNSPVAQTMLYSQGFCVFSMEQLALLRKLSEKRQQQQQQQQMSHHASSKTFFN. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05465 292 SMART finulus 148 197 IPR011598 GO:0046983
Seca4g05465 292 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 268 IPR045843 GO:0003700|GO:0006355
Seca4g05465 292 Gene3D - 147 211 IPR036638 GO:0046983
Seca4g05465 292 MobiDBLite consensus disorder prediction 104 141 - -
Seca4g05465 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Seca4g05465 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 207 IPR036638 GO:0046983
Seca4g05465 292 MobiDBLite consensus disorder prediction 273 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05465 Seca-Chr4 102879636 102880514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05465 101 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 38.462 1.22e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g05465 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05465 - - aprc:113855910 340.117