LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05462	ATGGGATTGATAAGACCTGGTTATACGGTTGTTTATCTCATTCTTCTTTGCGCGTTGGTCAAAAGGGGCTTGGAGGGGAAGATGTGGAAACCTGAGGAGTTTTATAGAGACCATAGTGCTTTCTCATCGTCCCTTCATATAGACGGCAAAAAGGTAGAGCAGATGTGGAAACATTGCAGGAAAGAATTGATAGAGAGGAACAATGATATTAAATATTTTGACTTCCATCTATTGGGTGGAAGCAGTGACAAGAGATCAACTTTTTCACTAGGAAAGGACATATTACAAAGAGCAACTAAAATTCTGCCTCTCCATATGAAACAATACATTTTGGATTACATAAGAAACATAGATCCTCCTACTCCTGTTTCAGAAGAGCAGAGACATAAGCTGAAGAAGCATTTTATGTCACTCTTTGGTTTGGCAAGTGGTCGCAGACATTTGCTCTCCGAGTCACCACATAATCAGATACCACCAAAGCCTGATTCTGTTCCAGCATCAGCCACTTCTCCTTCTCCATCTTCAACTCCAAAGCTCCCATCTGATGATTTGTCACCCCTTTCAAATATGTTTGTGCCACCTTCACCACCTCCTCCTCCTCATGCTTTTAATCCCAGGTATGATGATAAACAACAGAAAGCAGTAACTTATGGTGCTGCTGCATCAGGAGTTATAATCTTTGTAGGCTTGATCCTATGCTGTTGTGAGGTCAGGAAGACCAAAAAAGTTGACAAAGATGACAGGCCTTTACTAGTATTGAGCCCAATTGATTTTTCTGGTGGTACACAAAAGTCTACTGGTTTGGAAAATTATGACAGGAAAGAAGCTGGTATTAACTATGAAAAGAGACCTTCTATTGTTAGGAATTTGTCCATTGAGCCTGAAGACAATAATACCTCACTGGCTGAGACAACATCATCAGATGATAAGGGACAAGTACCAGTCTCTCAATTAAATCCTCCTCCTGGAGGATCAGCCCCTGAGCCTCCATCTCCACCTCCACCACCGCCACCTGCTCTTGCACCTCGCCCTCCACCTCCTCCAAAAATAGCTCGGGCTCCACCTGCTCCTCCCCAACCAAAGGCAGGTAGGAATCAACCTTCACCTCTAGGACCACTTCGTTCTGGTGAGGCTGGTGGTGAATCTGATGCTCCAAAACCAAAACTAAAGCCATTTTTCTGGGATAAGGTTGCTGCCAATCCTGATCAAGCAATGGTCTGGCATGAGATCAGAGCAGGATCATTCCAGTTCAGTGAAGAAAAGATAGAGTCTTTATTTGGCTTCATCAACCAGAAAAGAAACGACAGAAGAAAAGAGTCACAATCTTTAGAACCTTCTGTCCAGCAAATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTGTTTTACGAGCTCTGAATGTGATCACAGAAGAAGTTATTAATGCCCTTAAAGAAGGTAACAAGATTCCTGTTGAGCTCATCCAGACATTATTGAAAATGGCACCAACAACTGACGAGGAACTGAAACTAAGGTTATTCACAGGCGACATTTCTCAACTTGGCCCTGCAGAGAGGTTTCTCAAGGCCTTAGTTGAAATTCCCTTAGCTTTCAAACGTCTTGAATCTCTAATGTTCATGTTTACACTTCCAGAAGAGGCCTCAAGCATTAAGGAGTGCTTTTCAACATTAGAGGTTTCTTGCAACAAACTAAGAAAAAGCAGGCTCTTCCTAAAGCTACTAGAAGCAGTTCTCAAGACTGGAAACCGCATGAATGATGGCACCTATCGTGGTGGTGCTAAAGCATTTAGGCTTGACACACTTTTGAAACTTTCATATGTAAAAGGAACCGATGGCAAGACCACACTGCTACACTTTGTGGTTCAGGAGATTATTCGTTCTGAGGGCATAAGAGCTGTACGAACAGCAAAAGCAAGCCAAAGCCATTCAAGTATGAAAACCAAGGATCTCATTGAGGATGCCAATGAAGAATCAGAAGAGCACTATCGCAGCCTTGGCCTTCAAGTGGTTTCAGGTCTAACTAGTGAACTAGAAGATGTGAAAAAGGCAGCAGTTATAGATGGTGATGCACTAACAGCTGCAGTGTTGAAACTTAATCAGTCATTGGCAAAAAGTGAAGAGTTGCTGAATGCTGATCTGAAGAAACTGGAAGAAGACAGTGAGTTCCAACATTCCCTGGCAAGTTTTGTGGAGAAAGCAAAAATAGAAGTGTCATGGCTGATAGCAGAAGAGAAGAGGATAATGGCTGAGGTTAAGAGCACAGGAGATTATTTCCATGGGAATGCAGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTGCGTGATTTCTTGATTATGTTGGACAAAGTATGCAAAGAGGTGAAAAATACAACAACAACAACAACAAAGGCTTCTTGCACGAAAGAGGCTCCATCAGTGTCATCCTCTCCAGACACTCGTCAGCAGTCACCTTCTGATGTACATAGGAAACTATTTCCAGCCATATTAGAGAGGAGAGTGCATGACTCTAGTTCTGATGATGATGATGATGATTCAGATGATGAGATCTCACTCACGTAG	2568	0.4233	MGLIRPGYTVVYLILLCALVKRGLEGKMWKPEEFYRDHSAFSSSLHIDGKKVEQMWKHCRKELIERNNDIKYFDFHLLGGSSDKRSTFSLGKDILQRATKILPLHMKQYILDYIRNIDPPTPVSEEQRHKLKKHFMSLFGLASGRRHLLSESPHNQIPPKPDSVPASATSPSPSSTPKLPSDDLSPLSNMFVPPSPPPPPHAFNPRYDDKQQKAVTYGAAASGVIIFVGLILCCCEVRKTKKVDKDDRPLLVLSPIDFSGGTQKSTGLENYDRKEAGINYEKRPSIVRNLSIEPEDNNTSLAETTSSDDKGQVPVSQLNPPPGGSAPEPPSPPPPPPPALAPRPPPPPKIARAPPAPPQPKAGRNQPSPLGPLRSGEAGGESDAPKPKLKPFFWDKVAANPDQAMVWHEIRAGSFQFSEEKIESLFGFINQKRNDRRKESQSLEPSVQQIQIIDPKKAQNLSIVLRALNVITEEVINALKEGNKIPVELIQTLLKMAPTTDEELKLRLFTGDISQLGPAERFLKALVEIPLAFKRLESLMFMFTLPEEASSIKECFSTLEVSCNKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAKAFRLDTLLKLSYVKGTDGKTTLLHFVVQEIIRSEGIRAVRTAKASQSHSSMKTKDLIEDANEESEEHYRSLGLQVVSGLTSELEDVKKAAVIDGDALTAAVLKLNQSLAKSEELLNADLKKLEEDSEFQHSLASFVEKAKIEVSWLIAEEKRIMAEVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMLDKVCKEVKNTTTTTTKASCTKEAPSVSSSPDTRQQSPSDVHRKLFPAILERRVHDSSSDDDDDDSDDEISLT.	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	794	818	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	190	204	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	794	855	-	-
	Seca4g05462	855	Pfam	Formin Homology 2 Domain	381	783	IPR015425	-
	Seca4g05462	855	Coils	Coil	701	721	-	-
	Seca4g05462	855	SMART	it6_source	379	798	IPR015425	-
	Seca4g05462	855	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	333	793	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	150	207	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	291	314	-	-
	Seca4g05462	855	Gene3D	Formin, FH2 domain	385	816	IPR042201	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	827	841	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	320	365	-	-
	Seca4g05462	855	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	379	809	IPR015425	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	287	387	-	-
	Seca4g05462	855	MobiDBLite	consensus disorder prediction	167	183	-	-
	Seca4g05462	855	PANTHER	FORMIN-RELATED	143	841	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05462	Seca-Chr4	102850218	102854894	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05462	360	836	FH2 protein (formin) Gene Family	AT5G54650	61.875	0.0	565

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05462	-		-	psat:127086789	926.391