Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05455 ATGGCTTCCTCAAAGCTCTTTACAATTTCTGTTTTCTCATTGACTTTAGCTCTCCTTCTCCAATCATCTTTTGGAGCTGACCCTCTTTTCCATTTCTGTTCAAGCTCAGAGAATTTCACAGCCCATAGCCCTTATGAATCCAACTTGAAAACCCTCATTAACTCACTTATCTACAAGACCCCTTCAACAGGCTTTGGTATGGGCTCAGTGGGCCAATACCAAAACCAACAAGCATATGGGCTTGCACTTTGCCGCGGCGATGTCTCAGCCCAAGAATGCAAAACGTGTGTCTCTGAGGCTAGCAAAGAAATCCGCAATCGCTGTCCATACAACAAAGGTGCCATCATATGGTATGATTATTGCTTGTTCAAGTACTTGGACACAGATTTCTTTGGCAAGATTGATAACACCAACAAGTTCTATATGTGGAACTTGAATAGTGTTAGTGACCCTACCACATTTAACTATAAGACTAAAGAGTTATTGAGCCAGCTTTCCTACAAAGCTTATGTGAACCCAAAATTGTATGCAACCGGAGAGCTAAAGCTTGGGAAATCGGAGACACTTTATGGGTTGACTCAGTGCACGAGAGACCTCTCTAGCGTTGATTGTAAGAAGTGTCTTGATGATGCAATTAACGATCTTCCAAATTGTTGTGATGGGAAAAAGGGAGGCAGAGTTGTGAGTGGGAGCTGCAACTTCTTTACAACTCTTCTCTTCTCGCTGACCTTAGCTCTCTTTCTCCAAACATCTTTTGGAGCCAATCCTCTCTCATATGTCTGCTCAAGCTCTGAGAAATTCACAACTAGTTATGAATCAAACTTGAAAGCGCTCATAAACTTGCTTACTGACAAGACCCCTTCAACAGGTTTTGGTATGGGCTCAATGGGCCAATACCAAAACCAAAAAGCATATGGGCTCGCTCTTTGTCGTGGCGATGTGTCAGCCTCAGAATGCAAAACTTGTGTTTCAGAGGCAACCAAAGAAATCCTTAGTCAATGCCCATATAACAAAGGTGCAATTATATGGTACGACAACTGCTTGTTCAAGTACTTAGACGAAGATTTCTTTGGCAAGATTGACAATACCAACAAGTTCTTTACATCGAGCGGGCAAACACCCGGTGATCCTACCACATTTAACAACATGACCAAGGACTTATTAAGCAAACTTTCCTATAAAGCTTCTATGGACCCAAAAATGTATGCAACAGGAGAACTAAATATTGGAGGATCACAAAAAGTTTATGGTTTAGCTCAGTGCACCAGAGACCTTTCTAGCGTTGATTGCAAGAAGTGTCTTGATGATGTAGTTAACGAACTTCCAAATTGTTGTGATGGAAAAGTAGCAGGAAGAGTTGTCGATGGTAGCTGTAACATCCGATATGAGATTTTTCCATTTGTCAAAGAGTAA 1413 0.4154 MASSKLFTISVFSLTLALLLQSSFGADPLFHFCSSSENFTAHSPYESNLKTLINSLIYKTPSTGFGMGSVGQYQNQQAYGLALCRGDVSAQECKTCVSEASKEIRNRCPYNKGAIIWYDYCLFKYLDTDFFGKIDNTNKFYMWNLNSVSDPTTFNYKTKELLSQLSYKAYVNPKLYATGELKLGKSETLYGLTQCTRDLSSVDCKKCLDDAINDLPNCCDGKKGGRVVSGSCNFFTTLLFSLTLALFLQTSFGANPLSYVCSSSEKFTTSYESNLKALINLLTDKTPSTGFGMGSMGQYQNQKAYGLALCRGDVSASECKTCVSEATKEILSQCPYNKGAIIWYDNCLFKYLDEDFFGKIDNTNKFFTSSGQTPGDPTTFNNMTKDLLSKLSYKASMDPKMYATGELNIGGSQKVYGLAQCTRDLSSVDCKKCLDDVVNELPNCCDGKVAGRVVDGSCNIRYEIFPFVKE. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05455 470 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Seca4g05455 470 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Seca4g05455 470 Pfam Salt stress response/antifungal 149 234 IPR002902 -
Seca4g05455 470 Pfam Salt stress response/antifungal 33 125 IPR002902 -
Seca4g05455 470 Pfam Salt stress response/antifungal 375 463 IPR002902 -
Seca4g05455 470 Pfam Salt stress response/antifungal 261 352 IPR002902 -
Seca4g05455 470 ProSiteProfiles Gnk2-homologous domain profile. 253 356 IPR002902 -
Seca4g05455 470 FunFam Cysteine-rich receptor-like protein kinase 10 364 467 - -
Seca4g05455 470 Gene3D - 26 130 IPR038408 -
Seca4g05455 470 Gene3D - 256 356 IPR038408 -
Seca4g05455 470 Gene3D - 135 236 IPR038408 -
Seca4g05455 470 Gene3D - 363 467 IPR038408 -
Seca4g05455 470 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 9 237 - -
Seca4g05455 470 FunFam Cysteine-rich receptor-like protein kinase 10 138 239 - -
Seca4g05455 470 ProSiteProfiles Gnk2-homologous domain profile. 362 467 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05455 Seca-Chr4 102786121 102795623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05455 228 469 Pollen Coat Proteome AT4G20670 37.795 4.99e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05455 - - gmx:100527155 425.246