Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05452 ATGGCTATTGATGGCATAAATGACTTTCCCAATGTTAATTGGAAAAGTCTTAGCTTGGAGGAGTTTATGAAAGATCATTTTGTGGATCGTGAGGTTGCTTTTACGTTCTATAATTGGTTTGCAAGAATGAGGGGGTTTTCTCCGCAAAAGTGCAATGTTGGAAAGACAAGGAATGAAGTAGTTGTGCGACAAACTTTTGTTTGCTCTAGAAATGGAACTAATAAGGGCAAGATGGAAGGTTATAAAAGGGAACCTAAACGAATTGTAAGATGCGAATGTAAAGCCCATTGCAGGGTTCGTCACAATGCAAAAAATAGTCGTTGGTATGTGATTGCATTAATGACCTAA 348 0.3793 MAIDGINDFPNVNWKSLSLEEFMKDHFVDREVAFTFYNWFARMRGFSPQKCNVGKTRNEVVVRQTFVCSRNGTNKGKMEGYKREPKRIVRCECKAHCRVRHNAKNSRWYVIALMT. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05452 115 Pfam FAR1 DNA-binding domain 35 113 IPR004330 -
Seca4g05452 115 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 20 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05452 Seca-Chr4 102770904 102771251 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g05452 FAR1 6.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05452 - K17604 tpra:123915148 100.908