Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05447 ATGTGCAAAGGAACAGAATCAAGAAAACATGGTGGTTTGTGCAGCAGCTTCCCACCTAAAGAGAGTGCTTCACCTGGAGCAACCACATGTTGTGAGCTGTGTGGATTACAAGCTTCATTGTATTGCCAAGCTGATGATGCATATTTATGTAGAAAATGTGATAAATGGGTTCATGGTGCCAATTTTTTGGCCTTTAGGCACATTAGGTGTTTTCTCTGCAACACATGTCAGAACCTTACACAAAGATATCTCATTGGAGCCTCAGTAGAGGTGATTCTGCCAGCCAACATAAGTTGGGCCAAAGGAAACCTTCCTAACAACAGCAGCCAAAGGAAGTGTTCAAGAATAATGCATAACAACCCTTCCATGTTCCTTTAA 378 0.4206 MCKGTESRKHGGLCSSFPPKESASPGATTCCELCGLQASLYCQADDAYLCRKCDKWVHGANFLAFRHIRCFLCNTCQNLTQRYLIGASVEVILPANISWAKGNLPNNSSQRKCSRIMHNNPSMFL. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05447 125 CDD Bbox1_BBX-like 30 72 - -
Seca4g05447 125 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 30 81 - -
Seca4g05447 125 SMART bboxneu5 26 72 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05447 Seca-Chr4 102733880 102734257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05447 1 125 C2C2-CO-like Transcription Factor Family AT3G21890 44.615 8.96e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05447 - - gmx:100500322 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05447 4 102733880 102734257 Seca4g05447 4 102733880 102734257 ECH